Wall clock time and date at job start Mon Mar 30 2020 03:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47411 * 2 1 4 4 C 1.53001 * 109.47262 * 120.00133 * 2 1 3 5 5 N 1.46906 * 109.46978 * 185.69908 * 4 2 1 6 6 C 1.46961 * 110.99468 * 162.54471 * 5 4 2 7 7 C 1.53055 * 109.35878 * 183.18612 * 6 5 4 8 8 N 1.46951 * 109.36803 * 301.59936 * 7 6 5 9 9 C 1.46963 * 110.87879 * 59.32210 * 8 7 6 10 10 C 1.46958 * 110.99895 * 286.34337 * 5 4 2 11 11 H 1.08994 * 109.48793 * 296.77859 * 10 5 4 12 12 C 1.50692 * 109.48799 * 56.84701 * 10 5 4 13 13 H 1.07997 * 120.00522 * 32.64947 * 12 10 5 14 14 C 1.37881 * 119.99920 * 212.64012 * 12 10 5 15 15 N 1.31521 * 119.99863 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00236 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46887 * 90.00401 * 16 14 12 18 18 H 1.48493 * 109.47037 * 210.00599 * 16 14 12 19 19 H 1.48498 * 109.46857 * 330.00501 * 16 14 12 20 20 H 1.09000 * 109.46978 * 299.99326 * 1 2 3 21 21 H 1.08996 * 109.47607 * 59.99571 * 1 2 3 22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47426 * 240.00064 * 2 1 3 24 24 H 1.09001 * 109.47463 * 185.99388 * 3 2 1 25 25 H 1.08995 * 109.46954 * 305.99986 * 3 2 1 26 26 H 1.09004 * 109.46934 * 65.99709 * 3 2 1 27 27 H 1.08998 * 109.46963 * 65.70584 * 4 2 1 28 28 H 1.08999 * 109.47413 * 305.70045 * 4 2 1 29 29 H 1.08995 * 109.49018 * 303.15786 * 6 5 4 30 30 H 1.08997 * 109.48836 * 63.22542 * 6 5 4 31 31 H 1.09000 * 109.48433 * 61.57117 * 7 6 5 32 32 H 1.09002 * 109.48726 * 181.63051 * 7 6 5 33 33 H 1.00897 * 111.00312 * 295.45527 * 8 7 6 34 34 H 1.09001 * 109.48461 * 180.71602 * 9 8 7 35 35 H 1.08997 * 109.48690 * 60.64941 * 9 8 7 36 36 H 0.96995 * 119.99574 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5026 -0.6033 1.3199 6 6 3.9904 -0.9047 2.6730 7 6 5.5054 -0.6938 2.7249 8 7 6.1524 -1.5602 1.7297 9 6 5.6645 -1.2587 0.3766 10 6 4.1495 -1.4697 0.3247 11 1 3.9197 -2.5119 0.5457 12 6 3.6405 -1.1228 -1.0506 13 1 3.3676 -0.1044 -1.2844 14 6 3.5232 -2.1056 -2.0105 15 7 3.8553 -3.3460 -1.7256 16 14 2.8915 -1.6759 -3.7151 17 1 4.0347 -1.3069 -4.5881 18 1 2.1865 -2.8486 -4.2919 19 1 1.9512 -0.5304 -3.6202 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1247 1.4444 -0.1073 25 1 1.5916 1.9864 -0.8314 26 1 1.7670 1.9244 0.9388 27 1 1.7625 -1.7742 1.1996 28 1 1.5957 -0.2698 2.1363 29 1 3.5061 -0.2421 3.3902 30 1 3.7588 -1.9406 2.9206 31 1 5.7352 0.3485 2.5039 32 1 5.8736 -0.9447 3.7197 33 1 6.0156 -2.5342 1.9547 34 1 6.1487 -1.9215 -0.3405 35 1 5.8962 -0.2228 0.1290 36 1 3.7725 -4.0374 -2.4008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218991576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:36 Heat of formation + Delta-G solvation = -12.195115 kcal Electronic energy + Delta-G solvation = -15533.250306 eV Core-core repulsion = 13244.408561 eV Total energy + Delta-G solvation = -2288.841745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22825 -36.97723 -34.82933 -33.63431 -31.55300 -28.14912 -27.73815 -26.72052 -24.07870 -23.50452 -21.08085 -20.58831 -18.54108 -16.89568 -16.62858 -16.20340 -15.52359 -15.31512 -15.25593 -14.65005 -14.20568 -14.07265 -13.77479 -13.21787 -12.90161 -12.85654 -12.74332 -12.57560 -12.26480 -12.08263 -12.00853 -11.77010 -11.51020 -11.43758 -11.11729 -10.80341 -10.39384 -9.28252 -8.83729 -8.11471 -6.09309 1.40909 1.43547 1.51913 2.42230 3.11031 3.36290 3.61101 4.19055 4.27213 4.39362 4.42506 4.54844 4.58922 4.67332 4.78584 4.82015 4.88703 4.95535 5.06433 5.11992 5.14327 5.16022 5.23689 5.31384 5.49037 5.63586 5.70860 5.84265 5.94846 6.05318 6.32321 6.39983 6.54655 6.79865 7.00110 7.47751 8.96940 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.015471 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.928886 B = 1809.371921 C = 2624.131635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C -0.112 4.112 4 C 0.093 3.907 5 N -0.533 5.533 6 C 0.015 3.985 7 C 0.068 3.932 8 N -0.696 5.696 9 C 0.087 3.913 10 C 0.181 3.819 11 H -0.017 1.017 12 C -0.492 4.492 13 H 0.082 0.918 14 C 0.011 3.989 15 N -0.930 5.930 16 Si 0.940 3.060 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.258 1.258 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.038 0.962 23 H 0.102 0.898 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.048 0.952 27 H -0.010 1.010 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.331 0.669 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 6.032 5.924 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.169 4.169 4 C -0.035 4.035 5 N -0.258 5.258 6 C -0.115 4.115 7 C -0.062 4.062 8 N -0.323 5.323 9 C -0.043 4.043 10 C 0.072 3.928 11 H 0.001 0.999 12 C -0.531 4.531 13 H 0.100 0.900 14 C -0.187 4.187 15 N -0.570 5.570 16 Si 0.766 3.234 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.182 1.182 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.120 0.880 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.008 0.992 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.010 6.759 5.693 9.063 hybrid contribution -1.425 -1.706 -0.823 2.370 sum -3.435 5.054 4.871 7.814 Atomic orbital electron populations 1.21787 0.95667 1.00566 1.01578 1.21945 0.94338 0.97448 1.00912 1.21444 1.00825 0.94828 0.99841 1.21723 0.87947 0.95900 0.97974 1.62314 1.05319 1.54678 1.03507 1.22904 0.98733 0.97952 0.91882 1.22079 0.89934 0.98217 0.95981 1.60887 1.59715 1.08603 1.03081 1.21922 0.94282 0.99526 0.88596 1.19863 0.92358 0.89500 0.91063 0.99941 1.21435 1.40876 0.95476 0.95299 0.89993 1.25647 0.96249 0.94908 1.01903 1.70063 1.50294 1.01574 1.35098 0.85807 0.78839 0.77913 0.80819 1.20283 1.21764 1.18214 0.92206 0.92613 0.94269 0.88040 0.93427 0.93945 0.93278 0.99163 0.91766 0.89562 0.97513 0.90814 0.88567 0.85279 0.93801 0.92477 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.19 71.98 0.66 -3.79 16 2 C -0.13 -4.97 2.36 -10.80 -0.03 -5.00 16 3 C -0.11 -3.93 8.24 71.98 0.59 -3.34 16 4 C 0.09 3.71 4.40 86.30 0.38 4.09 16 5 N -0.53 -22.05 3.67 -874.87 -3.21 -25.26 16 6 C 0.02 0.53 5.57 86.31 0.48 1.01 16 7 C 0.07 2.18 6.72 86.31 0.58 2.76 16 8 N -0.70 -26.49 6.91 -513.42 -3.55 -30.04 16 9 C 0.09 3.95 5.99 86.31 0.52 4.47 16 10 C 0.18 8.77 1.96 44.17 0.09 8.86 16 11 H -0.02 -0.98 7.37 -2.39 -0.02 -1.00 16 12 C -0.49 -25.28 5.18 25.60 0.13 -25.15 16 13 H 0.08 4.13 4.56 -2.91 -0.01 4.12 16 14 C 0.01 0.60 5.41 84.65 0.46 1.06 16 15 N -0.93 -53.47 12.83 21.45 0.28 -53.20 16 16 Si 0.94 42.54 29.37 68.60 2.01 44.56 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.10 4.72 3.99 -2.39 -0.01 4.71 16 24 H 0.05 1.86 6.71 -2.39 -0.02 1.85 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H -0.01 -0.46 8.03 -2.39 -0.02 -0.48 16 28 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 29 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 30 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.33 12.55 8.89 -89.70 -0.80 11.75 16 34 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -56.72 274.29 -0.36 -57.08 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.25 Total: 21.89 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.86 Total: -15.03 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -6.48 Total: -108.49 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.01 Total: 44.56 kcal Total: -56.72 -0.36 -57.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.886 kcal (2) G-P(sol) polarization free energy of solvation -56.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds