Wall clock time and date at job start Mon Mar 30 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47219 * 120.00107 * 2 1 3 5 5 N 1.46905 * 109.47232 * 177.73202 * 4 2 1 6 6 C 1.46960 * 110.99660 * 307.76754 * 5 4 2 7 7 C 1.53048 * 109.36055 * 176.81101 * 6 5 4 8 8 N 1.47002 * 109.37820 * 58.40454 * 7 6 5 9 9 C 1.46961 * 110.85321 * 300.69112 * 8 7 6 10 10 C 1.46956 * 111.00043 * 183.97082 * 5 4 2 11 11 H 1.08992 * 109.49189 * 63.21423 * 10 5 4 12 12 C 1.50706 * 109.50411 * 303.16274 * 10 5 4 13 13 H 1.08001 * 120.00055 * 0.10225 * 12 10 5 14 14 C 1.37875 * 119.99968 * 180.09908 * 12 10 5 15 15 N 1.31515 * 119.99885 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47130 * 90.00162 * 16 14 12 18 18 H 1.48503 * 109.47413 * 209.99946 * 16 14 12 19 19 H 1.48497 * 109.47217 * 330.00181 * 16 14 12 20 20 H 1.09001 * 109.47476 * 299.99764 * 1 2 3 21 21 H 1.08995 * 109.47216 * 60.00407 * 1 2 3 22 22 H 1.09009 * 109.47046 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46927 * 239.99741 * 2 1 3 24 24 H 1.08997 * 109.46883 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46541 * 299.99949 * 3 2 1 26 26 H 1.08993 * 109.46904 * 60.00011 * 3 2 1 27 27 H 1.08995 * 109.47214 * 57.72771 * 4 2 1 28 28 H 1.09007 * 109.47013 * 297.72988 * 4 2 1 29 29 H 1.09004 * 109.48921 * 296.77875 * 6 5 4 30 30 H 1.09000 * 109.48910 * 56.82379 * 6 5 4 31 31 H 1.09008 * 109.48633 * 178.36766 * 7 6 5 32 32 H 1.08994 * 109.49470 * 298.41050 * 7 6 5 33 33 H 1.00897 * 111.03053 * 176.81566 * 8 7 6 34 34 H 1.09004 * 109.48857 * 299.33069 * 9 8 7 35 35 H 1.09001 * 109.48753 * 179.28603 * 9 8 7 36 36 H 0.97002 * 120.00161 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5080 -0.7689 1.2221 6 6 3.9936 -1.3212 -0.0503 7 6 5.5234 -1.2801 -0.0703 8 7 6.0469 -2.0488 1.0680 9 6 5.5609 -1.4964 2.3402 10 6 4.0311 -1.5375 2.3603 11 1 3.6940 -2.5714 2.2866 12 6 3.5289 -0.9355 3.6473 13 1 2.8840 -0.0695 3.6229 14 6 3.8926 -1.4903 4.8560 15 7 4.6775 -2.5452 4.8856 16 14 3.2707 -0.7437 6.4513 17 1 1.9838 -1.3820 6.8279 18 1 4.2693 -0.9710 7.5266 19 1 3.0645 0.7153 6.2676 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6438 -1.7365 1.2698 28 1 1.7103 -0.1845 2.1388 29 1 3.6561 -2.3527 -0.1514 30 1 3.6027 -0.7279 -0.8769 31 1 5.8867 -1.7159 -1.0011 32 1 5.8605 -0.2462 0.0030 33 1 7.0552 -2.0816 1.0497 34 1 5.8984 -0.4649 2.4413 35 1 5.9515 -2.0896 3.1670 36 1 4.9337 -2.9354 5.7360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:39 Heat of formation + Delta-G solvation = -1.373694 kcal Electronic energy + Delta-G solvation = -15199.303469 eV Core-core repulsion = 12910.930975 eV Total energy + Delta-G solvation = -2288.372493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.40022 -35.51005 -33.11203 -32.09024 -29.53633 -26.72569 -26.40068 -24.95505 -22.73393 -21.70137 -19.30520 -18.51366 -16.63394 -15.60778 -14.71044 -14.49546 -14.01759 -13.81245 -13.57595 -13.30610 -12.85959 -12.38412 -12.11426 -11.84552 -11.70916 -11.25120 -10.96325 -10.77141 -10.63009 -10.58566 -10.45321 -10.25415 -10.07934 -9.91594 -9.30520 -8.88247 -8.46827 -7.56119 -7.06537 -6.02101 -4.06934 3.30051 3.36818 3.40719 4.40190 4.97364 5.11771 5.30517 5.34703 5.41208 5.61626 5.81498 5.95356 5.99323 6.03221 6.06698 6.12829 6.25468 6.41000 6.42338 6.49743 6.57220 6.65858 6.83490 6.85985 6.88922 7.03747 7.41233 7.64141 7.78984 7.94326 8.16876 8.24247 8.39663 8.65801 9.01526 9.58373 11.04585 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.012339 C = 0.008869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.941553 B = 2268.623103 C = 3156.457738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.133 4.133 4 C 0.074 3.926 5 N -0.534 5.534 6 C 0.053 3.947 7 C 0.063 3.937 8 N -0.698 5.698 9 C 0.068 3.932 10 C 0.223 3.777 11 H 0.006 0.994 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.054 0.946 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.324 0.676 34 H 0.011 0.989 35 H 0.106 0.894 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 3.867 -8.373 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.191 4.191 4 C -0.055 4.055 5 N -0.259 5.259 6 C -0.075 4.075 7 C -0.067 4.067 8 N -0.328 5.328 9 C -0.061 4.061 10 C 0.116 3.884 11 H 0.024 0.976 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.139 0.861 34 H 0.030 0.970 35 H 0.124 0.876 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.834 3.742 -8.217 9.463 hybrid contribution -0.016 0.278 0.915 0.957 sum -2.850 4.020 -7.302 8.809 Atomic orbital electron populations 1.21797 0.95946 1.01224 1.01184 1.21294 0.94691 0.97184 0.98907 1.21676 1.02182 0.95179 1.00021 1.21973 0.88593 0.97773 0.97114 1.62261 1.07464 1.53900 1.02250 1.22124 0.94458 0.97161 0.93803 1.21885 0.95394 0.95490 0.93924 1.60741 1.12712 1.55264 1.04083 1.22299 0.97979 0.96399 0.89419 1.19229 0.90444 0.91582 0.87119 0.97641 1.21153 1.29841 1.13733 0.89781 0.91800 1.24962 0.95153 0.94912 0.99145 1.69887 1.35427 1.21759 1.25878 0.86528 0.78483 0.79593 0.83010 1.20743 1.21251 1.19864 0.92729 0.93307 0.93134 0.91825 0.91603 0.94428 0.93092 0.96230 0.90150 0.95665 0.91657 0.92317 0.95590 0.86055 0.97016 0.87642 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 2 C -0.10 -1.61 2.44 -90.62 -0.22 -1.84 16 3 C -0.13 -2.03 8.99 37.16 0.33 -1.70 16 4 C 0.07 1.47 4.12 -3.82 -0.02 1.46 16 5 N -0.53 -11.70 3.96 -227.87 -0.90 -12.60 16 6 C 0.05 1.03 5.11 -3.77 -0.02 1.01 16 7 C 0.06 1.17 6.72 -3.74 -0.03 1.14 16 8 N -0.70 -14.59 6.91 -113.60 -0.78 -15.38 16 9 C 0.07 1.67 5.75 -3.77 -0.02 1.65 16 10 C 0.22 5.75 1.94 -68.81 -0.13 5.62 16 11 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 12 C -0.51 -13.87 7.98 -34.44 -0.27 -14.15 16 13 H 0.06 1.75 6.46 -52.49 -0.34 1.41 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -25.35 11.34 55.43 0.63 -24.72 16 16 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.06 0.98 6.11 -51.93 -0.32 0.67 16 24 H 0.06 1.10 7.61 -51.93 -0.39 0.70 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 1.73 6.43 -51.93 -0.33 1.40 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.10 5.85 -51.93 -0.30 0.80 16 31 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.32 5.93 8.90 -39.29 -0.35 5.58 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 2.86 6.12 -51.93 -0.32 2.54 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 275.94 15.07 4.16 4.16 Total: -1.00 -28.33 275.94 -8.19 -36.52 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.14 Total: 2.63 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.13 Total: -6.86 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -1.06 Total: -52.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.33 -8.19 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.148 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds