Wall clock time and date at job start Mon Mar 30 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47219 * 120.00107 * 2 1 3 5 5 N 1.46905 * 109.47232 * 177.73202 * 4 2 1 6 6 C 1.46960 * 110.99660 * 307.76754 * 5 4 2 7 7 C 1.53048 * 109.36055 * 176.81101 * 6 5 4 8 8 N 1.47002 * 109.37820 * 58.40454 * 7 6 5 9 9 C 1.46961 * 110.85321 * 300.69112 * 8 7 6 10 10 C 1.46956 * 111.00043 * 183.97082 * 5 4 2 11 11 H 1.08992 * 109.49189 * 63.21423 * 10 5 4 12 12 C 1.50706 * 109.50411 * 303.16274 * 10 5 4 13 13 H 1.08001 * 120.00055 * 0.10225 * 12 10 5 14 14 C 1.37875 * 119.99968 * 180.09908 * 12 10 5 15 15 N 1.31515 * 119.99885 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47130 * 90.00162 * 16 14 12 18 18 H 1.48503 * 109.47413 * 209.99946 * 16 14 12 19 19 H 1.48497 * 109.47217 * 330.00181 * 16 14 12 20 20 H 1.09001 * 109.47476 * 299.99764 * 1 2 3 21 21 H 1.08995 * 109.47216 * 60.00407 * 1 2 3 22 22 H 1.09009 * 109.47046 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46927 * 239.99741 * 2 1 3 24 24 H 1.08997 * 109.46883 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46541 * 299.99949 * 3 2 1 26 26 H 1.08993 * 109.46904 * 60.00011 * 3 2 1 27 27 H 1.08995 * 109.47214 * 57.72771 * 4 2 1 28 28 H 1.09007 * 109.47013 * 297.72988 * 4 2 1 29 29 H 1.09004 * 109.48921 * 296.77875 * 6 5 4 30 30 H 1.09000 * 109.48910 * 56.82379 * 6 5 4 31 31 H 1.09008 * 109.48633 * 178.36766 * 7 6 5 32 32 H 1.08994 * 109.49470 * 298.41050 * 7 6 5 33 33 H 1.00897 * 111.03053 * 176.81566 * 8 7 6 34 34 H 1.09004 * 109.48857 * 299.33069 * 9 8 7 35 35 H 1.09001 * 109.48753 * 179.28603 * 9 8 7 36 36 H 0.97002 * 120.00161 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5080 -0.7689 1.2221 6 6 3.9936 -1.3212 -0.0503 7 6 5.5234 -1.2801 -0.0703 8 7 6.0469 -2.0488 1.0680 9 6 5.5609 -1.4964 2.3402 10 6 4.0311 -1.5375 2.3603 11 1 3.6940 -2.5714 2.2866 12 6 3.5289 -0.9355 3.6473 13 1 2.8840 -0.0695 3.6229 14 6 3.8926 -1.4903 4.8560 15 7 4.6775 -2.5452 4.8856 16 14 3.2707 -0.7437 6.4513 17 1 1.9838 -1.3820 6.8279 18 1 4.2693 -0.9710 7.5266 19 1 3.0645 0.7153 6.2676 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6438 -1.7365 1.2698 28 1 1.7103 -0.1845 2.1388 29 1 3.6561 -2.3527 -0.1514 30 1 3.6027 -0.7279 -0.8769 31 1 5.8867 -1.7159 -1.0011 32 1 5.8605 -0.2462 0.0030 33 1 7.0552 -2.0816 1.0497 34 1 5.8984 -0.4649 2.4413 35 1 5.9515 -2.0896 3.1670 36 1 4.9337 -2.9354 5.7360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218991642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:39 Heat of formation + Delta-G solvation = -21.530440 kcal Electronic energy + Delta-G solvation = -15200.177531 eV Core-core repulsion = 12910.930975 eV Total energy + Delta-G solvation = -2289.246556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.10356 -37.00219 -35.10087 -33.74004 -31.39818 -28.11821 -27.88624 -26.89414 -24.38009 -23.48732 -20.86367 -20.18917 -18.62241 -17.44889 -16.50161 -16.00411 -15.62685 -15.47196 -15.26175 -15.07495 -14.39448 -14.10905 -13.71155 -13.23278 -13.01229 -12.86618 -12.68602 -12.59388 -12.44096 -12.19076 -11.93689 -11.91178 -11.74335 -11.50810 -10.93360 -10.86410 -10.56421 -9.28762 -8.89680 -8.13482 -6.26384 1.40641 1.41392 1.52414 2.40402 3.11695 3.33736 3.56999 3.97453 4.14228 4.26887 4.32907 4.49832 4.51149 4.64923 4.76602 4.79655 4.87167 4.91356 4.99315 5.07143 5.10653 5.11970 5.19020 5.28698 5.42072 5.54246 5.61066 5.65315 5.68924 6.07915 6.27636 6.38206 6.68605 6.78418 6.89911 7.43280 8.92456 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.012339 C = 0.008869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.941553 B = 2268.623103 C = 3156.457738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.128 4.128 4 C 0.075 3.925 5 N -0.536 5.536 6 C 0.051 3.949 7 C 0.063 3.937 8 N -0.704 5.704 9 C 0.083 3.917 10 C 0.229 3.771 11 H -0.043 1.043 12 C -0.523 4.523 13 H 0.059 0.941 14 C 0.013 3.987 15 N -0.917 5.917 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.268 1.268 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.042 0.958 27 H -0.001 1.001 28 H 0.058 0.942 29 H 0.010 0.990 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.030 0.970 33 H 0.340 0.660 34 H 0.000 1.000 35 H 0.076 0.924 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 5.093 -9.746 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.186 4.186 4 C -0.053 4.053 5 N -0.261 5.261 6 C -0.077 4.077 7 C -0.067 4.067 8 N -0.336 5.336 9 C -0.047 4.047 10 C 0.121 3.879 11 H -0.026 1.026 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.786 3.214 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.193 1.193 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.048 0.952 33 H 0.158 0.842 34 H 0.018 0.982 35 H 0.094 0.906 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.315 4.974 -9.616 11.322 hybrid contribution 0.134 -0.135 1.282 1.296 sum -3.181 4.839 -8.334 10.148 Atomic orbital electron populations 1.21768 0.93961 1.01648 1.02384 1.21247 0.96317 0.97100 0.96577 1.21627 1.01081 0.94728 1.01124 1.21991 0.87577 0.96936 0.98777 1.62240 1.08597 1.52907 1.02328 1.22283 0.95345 0.96773 0.93282 1.22024 0.94633 0.95764 0.94231 1.60628 1.14102 1.55562 1.03281 1.21880 0.97127 0.95088 0.90582 1.18987 0.91298 0.89179 0.88426 1.02576 1.21393 1.30062 1.13722 0.91015 0.92318 1.25752 0.95236 0.95257 1.02366 1.70025 1.36204 1.22787 1.26655 0.85512 0.78018 0.78929 0.78928 1.20217 1.20657 1.19261 0.93041 0.90581 0.93182 0.90793 0.93212 0.91384 0.93931 0.98261 0.92386 0.97130 0.88362 0.88526 0.95160 0.84219 0.98178 0.90564 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.19 71.98 0.66 -2.80 16 2 C -0.09 -2.79 2.44 -10.79 -0.03 -2.81 16 3 C -0.13 -3.59 8.99 71.98 0.65 -2.95 16 4 C 0.08 3.05 4.12 86.30 0.36 3.40 16 5 N -0.54 -23.67 3.96 -874.86 -3.46 -27.13 16 6 C 0.05 1.91 5.11 86.31 0.44 2.36 16 7 C 0.06 2.19 6.72 86.30 0.58 2.77 16 8 N -0.70 -29.13 6.91 -513.32 -3.55 -32.67 16 9 C 0.08 4.19 5.75 86.31 0.50 4.68 16 10 C 0.23 12.22 1.94 44.18 0.09 12.31 16 11 H -0.04 -2.68 8.14 -2.39 -0.02 -2.70 16 12 C -0.52 -29.56 7.98 25.60 0.20 -29.36 16 13 H 0.06 3.30 6.46 -2.91 -0.02 3.28 16 14 C 0.01 0.73 5.30 84.65 0.45 1.18 16 15 N -0.92 -53.72 11.34 21.45 0.24 -53.48 16 16 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.07 2.06 6.11 -2.39 -0.01 2.05 16 24 H 0.05 1.55 7.61 -2.39 -0.02 1.53 16 25 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.06 2.57 6.43 -2.38 -0.02 2.55 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 3.01 5.85 -2.39 -0.01 3.00 16 31 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.34 12.12 8.90 -89.70 -0.80 11.32 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.08 4.29 6.12 -2.39 -0.01 4.28 16 36 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -62.76 275.94 -0.60 -63.37 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.24 Total: 14.90 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 3.89 Total: -11.22 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -6.77 Total: -113.28 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -62.76 -0.60 -63.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.836 kcal (2) G-P(sol) polarization free energy of solvation -62.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds