Wall clock time and date at job start Mon Mar 30 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47177 * 2 1 4 4 C 1.53005 * 109.46942 * 240.00148 * 2 1 3 5 5 N 1.46900 * 109.47030 * 120.00248 * 2 1 3 6 6 C 1.46960 * 110.99653 * 209.53003 * 5 2 1 7 7 C 1.53051 * 109.36191 * 176.81002 * 6 5 2 8 8 N 1.46949 * 109.36319 * 58.40679 * 7 6 5 9 9 C 1.46955 * 110.88088 * 300.67283 * 8 7 6 10 10 C 1.46949 * 111.00079 * 85.73572 * 5 2 1 11 11 H 1.09001 * 109.49508 * 63.22034 * 10 5 2 12 12 C 1.50698 * 109.50776 * 303.16339 * 10 5 2 13 13 H 1.07999 * 119.99766 * 324.54308 * 12 10 5 14 14 C 1.37871 * 120.00494 * 144.53982 * 12 10 5 15 15 N 1.31520 * 119.99964 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00461 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47125 * 90.00244 * 16 14 12 18 18 H 1.48500 * 109.46960 * 210.00160 * 16 14 12 19 19 H 1.48494 * 109.46687 * 329.99835 * 16 14 12 20 20 H 1.09008 * 109.47011 * 320.96164 * 1 2 3 21 21 H 1.08996 * 109.47139 * 80.96310 * 1 2 3 22 22 H 1.08996 * 109.47227 * 200.96312 * 1 2 3 23 23 H 1.09004 * 109.47198 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47285 * 299.99972 * 3 2 1 25 25 H 1.08994 * 109.47271 * 59.99976 * 3 2 1 26 26 H 1.09004 * 109.46838 * 299.99942 * 4 2 1 27 27 H 1.08995 * 109.46937 * 59.99922 * 4 2 1 28 28 H 1.09000 * 109.46846 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.48676 * 56.84829 * 6 5 2 30 30 H 1.09002 * 109.51240 * 296.79109 * 6 5 2 31 31 H 1.08997 * 109.49201 * 298.43368 * 7 6 5 32 32 H 1.09003 * 109.50341 * 178.38401 * 7 6 5 33 33 H 1.00898 * 111.00621 * 64.54426 * 8 7 6 34 34 H 1.08997 * 109.49399 * 299.35881 * 9 8 7 35 35 H 1.08998 * 109.49405 * 179.28589 * 9 8 7 36 36 H 0.96994 * 120.00145 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 3.3207 -0.1562 1.6229 7 6 3.7574 -0.8470 2.9169 8 7 3.8368 -2.2971 2.6923 9 6 2.5358 -2.8335 2.2688 10 6 2.0990 -2.1426 0.9748 11 1 2.8254 -2.3497 0.1889 12 6 0.7469 -2.6622 0.5591 13 1 -0.1497 -2.2314 0.9797 14 6 0.6543 -3.6874 -0.3580 15 7 1.7462 -4.2124 -0.8699 16 14 -1.0218 -4.3310 -0.8737 17 1 -1.5045 -3.5666 -2.0517 18 1 -0.9123 -5.7690 -1.2278 19 1 -1.9807 -4.1691 0.2484 20 1 -0.3633 0.7983 0.6473 21 1 -0.3633 0.1614 -1.0149 22 1 -0.3633 -0.9596 0.3676 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6766 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2491 29 1 3.2331 0.9166 1.7951 30 1 4.0612 -0.3403 0.8445 31 1 3.0311 -0.6400 3.7028 32 1 4.7356 -0.4715 3.2177 33 1 4.5559 -2.5202 2.0205 34 1 1.7955 -2.6490 3.0472 35 1 2.6233 -3.9062 2.0966 36 1 1.6812 -4.9339 -1.5148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218992006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:44 Heat of formation + Delta-G solvation = 0.616493 kcal Electronic energy + Delta-G solvation = -15830.947685 eV Core-core repulsion = 13542.661493 eV Total energy + Delta-G solvation = -2288.286192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73945 -36.92725 -35.03624 -31.92671 -31.76630 -28.28146 -28.03728 -27.18043 -25.03328 -23.18230 -21.49680 -19.58499 -18.54492 -16.92438 -16.53734 -16.08676 -15.54224 -15.44996 -15.04572 -14.56945 -14.24368 -13.87253 -13.71540 -13.04335 -12.87498 -12.87008 -12.71456 -12.50750 -12.33054 -12.11850 -11.92881 -11.76136 -11.72350 -11.68401 -10.97391 -10.71396 -10.45653 -9.21197 -8.70210 -8.08190 -6.11469 1.40999 1.44811 1.52290 2.43957 3.13784 3.36837 3.64036 4.18070 4.23247 4.34460 4.45728 4.55868 4.63032 4.69806 4.77320 4.82077 4.93330 4.97459 5.04338 5.12799 5.16099 5.18223 5.22689 5.35781 5.38032 5.55741 5.72298 5.86707 5.99074 6.05576 6.38318 6.51188 6.57857 6.89080 7.05045 7.51145 8.97926 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.014661 C = 0.011222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.969513 B = 1909.409086 C = 2494.486040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.176 4.176 5 N -0.531 5.531 6 C 0.015 3.985 7 C 0.065 3.935 8 N -0.696 5.696 9 C 0.082 3.918 10 C 0.177 3.823 11 H 0.007 0.993 12 C -0.492 4.492 13 H 0.067 0.933 14 C 0.023 3.977 15 N -0.921 5.921 16 Si 0.937 3.063 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.019 0.981 29 H 0.091 0.909 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.331 0.669 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 8.303 2.300 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.029 3.971 3 C -0.197 4.197 4 C -0.234 4.234 5 N -0.256 5.256 6 C -0.115 4.115 7 C -0.065 4.065 8 N -0.323 5.323 9 C -0.048 4.048 10 C 0.068 3.932 11 H 0.025 0.975 12 C -0.531 4.531 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.562 5.562 16 Si 0.764 3.236 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.191 1.191 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.098 0.902 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.025 0.975 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.037 8.084 3.257 8.777 hybrid contribution -0.208 -0.582 -2.278 2.360 sum 0.828 7.503 0.980 7.612 Atomic orbital electron populations 1.22266 0.94587 1.03692 0.99871 1.20773 0.95678 0.92673 0.87980 1.22096 1.00532 0.94928 1.02147 1.22573 0.98338 1.04479 0.97995 1.62524 1.24740 1.05275 1.33101 1.22977 0.90574 1.00933 0.97044 1.22114 1.01645 0.86691 0.96082 1.60872 1.07376 1.13387 1.50661 1.21988 0.89151 0.97364 0.96286 1.19940 0.96389 0.83858 0.92991 0.97494 1.21252 0.92805 1.16167 1.22916 0.91489 1.25484 0.98782 0.96970 0.96356 1.70030 1.28605 1.26559 1.30957 0.85863 0.81631 0.77334 0.78791 1.20439 1.21577 1.19117 0.93099 0.94077 0.90165 0.92806 0.91943 0.91510 0.89591 0.93855 0.96159 0.89078 0.97487 0.91091 0.88789 0.85303 0.92890 0.93760 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 8.72 71.98 0.63 -5.03 16 2 C 0.12 4.58 0.75 3.53 0.00 4.58 16 3 C -0.14 -4.26 7.10 71.98 0.51 -3.75 16 4 C -0.18 -7.58 7.13 71.98 0.51 -7.06 16 5 N -0.53 -21.72 4.40 -825.61 -3.64 -25.36 16 6 C 0.01 0.50 4.37 86.31 0.38 0.88 16 7 C 0.06 2.09 6.72 86.31 0.58 2.67 16 8 N -0.70 -26.39 6.91 -513.45 -3.55 -29.94 16 9 C 0.08 3.71 5.99 86.31 0.52 4.23 16 10 C 0.18 8.37 1.47 44.18 0.07 8.43 16 11 H 0.01 0.39 5.69 -2.39 -0.01 0.38 16 12 C -0.49 -25.07 5.27 25.60 0.13 -24.94 16 13 H 0.07 3.46 5.54 -2.91 -0.02 3.45 16 14 C 0.02 1.20 4.45 84.65 0.38 1.58 16 15 N -0.92 -51.12 12.34 21.45 0.26 -50.86 16 16 Si 0.94 42.27 29.54 68.60 2.03 44.30 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H 0.05 1.73 7.96 -2.38 -0.02 1.71 16 21 H 0.04 1.49 7.96 -2.39 -0.02 1.47 16 22 H 0.08 3.54 3.88 -2.39 -0.01 3.54 16 23 H 0.05 1.58 6.48 -2.38 -0.02 1.56 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.87 7.85 -2.39 -0.02 1.85 16 26 H 0.09 4.35 3.90 -2.38 -0.01 4.34 16 27 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 28 H 0.02 0.86 7.73 -2.39 -0.02 0.84 16 29 H 0.09 2.71 6.08 -2.39 -0.01 2.70 16 30 H 0.01 0.26 7.73 -2.39 -0.02 0.24 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.33 12.44 8.89 -89.70 -0.80 11.65 16 34 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -54.86 263.29 -0.92 -55.78 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.26 Total: 24.49 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 3.70 Total: -18.41 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -6.92 Total: -106.16 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -54.86 -0.92 -55.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218992006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.398 kcal (2) G-P(sol) polarization free energy of solvation -54.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds