Wall clock time and date at job start Mon Mar 30 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47754 * 111.00223 * 2 1 4 4 C 1.50774 * 111.91418 * 192.80975 * 3 2 1 5 5 H 1.08999 * 109.77700 * 334.93569 * 4 3 2 6 6 C 1.50698 * 109.73572 * 214.26285 * 4 3 2 7 7 H 1.07998 * 119.99930 * 1.35508 * 6 4 3 8 8 C 1.37881 * 119.99621 * 181.35621 * 6 4 3 9 9 N 1.31509 * 120.00364 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 119.99584 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47437 * 59.99991 * 10 8 6 12 12 H 1.48499 * 109.46997 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47025 * 299.99471 * 10 8 6 14 14 N 1.47690 * 108.09858 * 94.61017 * 4 3 2 15 15 C 1.40086 * 114.57043 * 278.68497 * 14 4 3 16 16 C 1.54518 * 111.50487 * 61.45664 * 15 14 4 17 17 C 1.48067 * 111.00012 * 232.40463 * 2 1 3 18 18 C 1.53002 * 108.79188 * 205.24361 * 17 2 1 19 19 C 1.53002 * 108.78674 * 323.45895 * 17 2 1 20 20 H 1.08999 * 109.47227 * 187.59651 * 1 2 3 21 21 H 1.09001 * 109.47173 * 67.59553 * 1 2 3 22 22 H 1.09000 * 109.47000 * 307.59993 * 1 2 3 23 23 H 1.09001 * 108.99120 * 313.43926 * 3 2 1 24 24 H 1.08999 * 108.98905 * 72.18317 * 3 2 1 25 25 H 0.96995 * 120.00129 * 180.02562 * 9 8 6 26 26 H 1.00897 * 110.99962 * 45.38898 * 14 4 3 27 27 H 1.08994 * 109.07446 * 300.93027 * 15 14 4 28 28 H 1.08998 * 109.01511 * 181.94089 * 15 14 4 29 29 H 1.08996 * 109.55898 * 164.14772 * 16 15 14 30 30 H 1.08994 * 109.56164 * 43.81859 * 16 15 14 31 31 H 1.09004 * 109.46545 * 38.78593 * 18 17 2 32 32 H 1.08996 * 109.47307 * 158.78187 * 18 17 2 33 33 H 1.08996 * 109.47086 * 278.78362 * 18 17 2 34 34 H 1.08999 * 109.47276 * 60.00338 * 19 17 2 35 35 H 1.09012 * 109.46928 * 179.97438 * 19 17 2 36 36 H 1.08997 * 109.47037 * 299.99772 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9985 1.3794 0.0000 4 6 3.4736 1.4159 -0.3101 5 1 3.9310 0.4643 -0.0392 6 6 4.1282 2.5330 0.4609 7 1 3.5405 3.1440 1.1299 8 6 5.4775 2.7749 0.3121 9 7 6.1932 2.0305 -0.5022 10 14 6.2891 4.1592 1.2684 11 1 6.1265 3.9167 2.7245 12 1 7.7350 4.2103 0.9341 13 1 5.6511 5.4506 0.9073 14 7 3.6320 1.6506 -1.7596 15 6 3.4913 0.5053 -2.5540 16 6 2.0826 -0.1133 -2.4116 17 6 1.9996 -0.8433 -1.0953 18 6 3.3993 -1.3271 -0.7110 19 6 1.0897 -2.0618 -1.2640 20 1 -0.3633 -1.0186 0.1359 21 1 -0.3633 0.3917 -0.9501 22 1 -0.3633 0.6270 0.8142 23 1 1.4640 1.9645 -0.7484 24 1 1.8312 1.8235 0.9812 25 1 7.1424 2.2004 -0.6066 26 1 3.0194 2.3874 -2.0757 27 1 4.2360 -0.2311 -2.2521 28 1 3.6587 0.7738 -3.5970 29 1 1.9070 -0.8130 -3.2286 30 1 1.3325 0.6771 -2.4383 31 1 3.4214 -1.5675 0.3520 32 1 3.6481 -2.2164 -1.2899 33 1 4.1255 -0.5419 -0.9211 34 1 0.0805 -1.7305 -1.5087 35 1 1.4703 -2.6908 -2.0689 36 1 1.0699 -2.6319 -0.3353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218995653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:46 Heat of formation + Delta-G solvation = 29.562641 kcal Electronic energy + Delta-G solvation = -15723.064931 eV Core-core repulsion = 13436.033938 eV Total energy + Delta-G solvation = -2287.030993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37065 -36.52494 -34.94762 -33.69627 -30.75993 -28.91454 -27.98362 -26.72403 -24.92001 -23.65536 -21.67636 -19.07837 -18.74829 -17.18813 -16.56336 -16.25562 -15.93946 -15.35140 -14.96108 -14.66611 -14.16227 -14.01385 -13.52490 -13.11845 -13.01516 -12.96215 -12.78735 -12.68459 -12.45172 -12.30921 -11.91818 -11.84134 -11.64958 -11.22228 -11.06345 -10.63633 -10.14184 -9.03288 -8.42023 -7.89529 -6.07219 1.47154 1.47347 1.54252 2.51601 3.05537 3.30885 3.87660 3.98733 4.13688 4.26090 4.37311 4.48926 4.49963 4.60297 4.68235 4.79702 4.82612 4.86571 4.95642 4.97979 5.02323 5.11931 5.19057 5.19618 5.26436 5.44998 5.57965 5.76027 5.85409 6.30172 6.38412 6.43897 6.80284 7.22522 7.39666 7.62406 9.13123 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045453 B = 0.010344 C = 0.009487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.871794 B = 2706.276932 C = 2950.638892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.554 5.554 3 C 0.055 3.945 4 C 0.205 3.795 5 H 0.062 0.938 6 C -0.546 4.546 7 H 0.044 0.956 8 C 0.040 3.960 9 N -0.879 5.879 10 Si 0.942 3.058 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.683 5.683 15 C 0.071 3.929 16 C -0.173 4.173 17 C 0.111 3.889 18 C -0.168 4.168 19 C -0.137 4.137 20 H 0.086 0.914 21 H 0.019 0.981 22 H 0.060 0.940 23 H 0.012 0.988 24 H 0.051 0.949 25 H 0.253 0.747 26 H 0.313 0.687 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -6.259 -2.837 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.074 4.074 4 C 0.099 3.901 5 H 0.079 0.921 6 C -0.585 4.585 7 H 0.062 0.938 8 C -0.164 4.164 9 N -0.516 5.516 10 Si 0.769 3.231 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.311 5.311 15 C -0.061 4.061 16 C -0.215 4.215 17 C 0.022 3.978 18 C -0.225 4.225 19 C -0.195 4.195 20 H 0.105 0.895 21 H 0.038 0.962 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.131 0.869 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.174 -6.595 -2.456 10.786 hybrid contribution -0.598 1.311 -0.189 1.453 sum -8.772 -5.284 -2.645 10.577 Atomic orbital electron populations 1.22439 0.87270 1.02783 0.99601 1.62225 1.07693 1.12765 1.45214 1.22597 0.98220 0.87529 0.99023 1.19244 0.88729 0.98000 0.84085 0.92063 1.21329 0.94027 1.17933 1.25241 0.93807 1.25543 0.97878 0.97673 0.95286 1.70156 1.06254 1.39252 1.35911 0.85907 0.77319 0.80616 0.79288 1.20071 1.21267 1.20249 1.57689 1.60191 1.08394 1.04835 1.21210 0.94603 0.93704 0.96564 1.22912 0.99807 1.00360 0.98413 1.20743 0.95346 0.93222 0.88510 1.22791 0.97437 1.01613 1.00634 1.22113 0.99006 0.96134 1.02206 0.89523 0.96248 0.92082 0.97025 0.93023 0.93798 0.86866 0.91199 0.93040 0.90026 0.93750 0.93884 0.91863 0.89867 0.91688 0.91093 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.29 127.69 1.06 1.84 16 2 N -0.55 -20.09 4.60 -876.03 -4.03 -24.11 16 3 C 0.06 2.36 4.62 85.42 0.39 2.76 16 4 C 0.21 10.14 1.93 43.29 0.08 10.23 16 5 H 0.06 3.28 4.03 -2.39 -0.01 3.27 16 6 C -0.55 -30.34 8.67 25.60 0.22 -30.12 16 7 H 0.04 2.42 7.46 -2.91 -0.02 2.40 16 8 C 0.04 2.21 5.39 84.66 0.46 2.66 16 9 N -0.88 -51.07 12.78 21.45 0.27 -50.79 16 10 Si 0.94 44.26 29.54 68.60 2.03 46.29 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 N -0.68 -31.89 5.35 -509.55 -2.72 -34.61 16 15 C 0.07 2.80 5.93 88.05 0.52 3.32 16 16 C -0.17 -5.67 5.01 30.38 0.15 -5.52 16 17 C 0.11 3.65 0.63 2.57 0.00 3.65 16 18 C -0.17 -6.21 6.52 71.98 0.47 -5.74 16 19 C -0.14 -3.45 6.94 71.98 0.50 -2.95 16 20 H 0.09 2.11 6.27 -2.39 -0.01 2.09 16 21 H 0.02 0.54 7.64 -2.39 -0.02 0.52 16 22 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 23 H 0.01 0.49 6.61 -2.39 -0.02 0.47 16 24 H 0.05 2.32 7.49 -2.39 -0.02 2.30 16 25 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.31 14.23 8.15 -89.70 -0.73 13.50 16 27 H 0.07 2.97 5.03 -2.39 -0.01 2.96 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.26 7.63 -2.39 -0.02 2.24 16 30 H 0.04 1.51 6.68 -2.39 -0.02 1.49 16 31 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 32 H 0.06 1.99 7.96 -2.39 -0.02 1.97 16 33 H 0.08 3.73 2.68 -2.39 -0.01 3.72 16 34 H 0.06 1.47 6.40 -2.39 -0.02 1.45 16 35 H 0.07 1.56 7.98 -2.38 -0.02 1.55 16 36 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 Total: -1.00 -59.40 260.27 -0.25 -59.65 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.34 Total: 23.45 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 3.86 Total: -19.87 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -6.48 Total: -109.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -59.40 -0.25 -59.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.212 kcal (2) G-P(sol) polarization free energy of solvation -59.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds