Wall clock time and date at job start Mon Mar 30 2020 03:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47687 * 110.99712 * 2 1 4 4 C 1.50782 * 108.09115 * 151.97324 * 3 2 1 5 5 H 1.09000 * 108.99841 * 333.99138 * 4 3 2 6 6 C 1.50702 * 108.99194 * 215.16470 * 4 3 2 7 7 H 1.07998 * 120.00062 * 0.02562 * 6 4 3 8 8 C 1.37883 * 119.99998 * 180.02562 * 6 4 3 9 9 N 1.31514 * 119.99550 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 120.00157 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46868 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47166 * 119.99910 * 10 8 6 13 13 H 1.48498 * 109.46914 * 240.00147 * 10 8 6 14 14 N 1.47751 * 111.90589 * 94.62259 * 4 3 2 15 15 C 1.48062 * 113.78452 * 318.87312 * 14 4 3 16 16 C 1.50751 * 112.94273 * 318.28540 * 15 14 4 17 17 C 1.52999 * 109.55728 * 332.81152 * 16 15 14 18 18 C 1.52997 * 109.55903 * 212.49646 * 16 15 14 19 19 C 1.40084 * 111.00114 * 231.35717 * 2 1 3 20 20 H 1.09004 * 109.46522 * 188.64656 * 1 2 3 21 21 H 1.08998 * 109.47276 * 308.64310 * 1 2 3 22 22 H 1.08997 * 109.46857 * 68.64975 * 1 2 3 23 23 H 1.08994 * 109.74130 * 271.62420 * 3 2 1 24 24 H 1.08998 * 109.74007 * 32.27867 * 3 2 1 25 25 H 0.97008 * 119.99909 * 179.97438 * 9 8 6 26 26 H 1.00897 * 111.00181 * 84.94419 * 14 4 3 27 27 H 1.08995 * 108.79408 * 79.18211 * 15 14 4 28 28 H 1.09000 * 108.79025 * 197.51207 * 15 14 4 29 29 H 1.08997 * 109.47527 * 218.57207 * 17 16 15 30 30 H 1.09007 * 109.47263 * 338.57214 * 17 16 15 31 31 H 1.09001 * 109.47235 * 98.56613 * 17 16 15 32 32 H 1.09005 * 109.47086 * 300.53200 * 18 16 15 33 33 H 1.09002 * 109.47570 * 60.52827 * 18 16 15 34 34 H 1.08997 * 109.46925 * 180.53333 * 18 16 15 35 35 H 1.08994 * 109.07270 * 308.66347 * 19 2 1 36 36 H 1.08996 * 109.07703 * 67.62548 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9982 1.3788 0.0000 4 6 3.3472 1.3626 0.6735 5 1 3.3879 0.5219 1.3661 6 6 3.5246 2.6437 1.4470 7 1 2.7410 3.3869 1.4479 8 6 4.6874 2.8671 2.1535 9 7 5.6414 1.9618 2.1528 10 14 4.9070 4.4547 3.1129 11 1 3.6971 5.3009 2.9534 12 1 5.1061 4.1408 4.5506 13 1 6.0927 5.1849 2.5969 14 7 4.4491 1.2355 -0.3026 15 6 4.1727 0.2731 -1.3932 16 6 3.5027 -0.9875 -0.9088 17 6 3.8837 -1.2416 0.5510 18 6 3.9510 -2.1695 -1.7706 19 6 1.9711 -0.8167 -1.0215 20 1 -0.3632 -1.0161 0.1545 21 1 -0.3634 0.6417 0.8026 22 1 -0.3633 0.3741 -0.9571 23 1 2.1030 1.7329 -1.0255 24 1 1.3204 2.0333 0.5479 25 1 6.4596 2.1191 2.6495 26 1 4.7097 2.1370 -0.6732 27 1 3.5279 0.7526 -2.1297 28 1 5.1144 0.0060 -1.8728 29 1 4.0304 -2.3102 0.7076 30 1 4.8068 -0.7103 0.7834 31 1 3.0857 -0.8851 1.2022 32 1 3.6824 -1.9835 -2.8105 33 1 5.0315 -2.2887 -1.6902 34 1 3.4585 -3.0784 -1.4251 35 1 1.4979 -1.7966 -0.9590 36 1 1.7327 -0.3681 -1.9858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218996579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:38 Heat of formation + Delta-G solvation = 31.250345 kcal Electronic energy + Delta-G solvation = -15623.014798 eV Core-core repulsion = 13336.056989 eV Total energy + Delta-G solvation = -2286.957809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46190 -34.80744 -33.96621 -31.46524 -28.39302 -26.83237 -26.45677 -25.34036 -23.78837 -21.99028 -19.30247 -17.94482 -16.62017 -15.09947 -14.94242 -14.67103 -14.33811 -13.99263 -13.40998 -12.98859 -12.45006 -12.24100 -11.84577 -11.80448 -11.55959 -11.24988 -10.98256 -10.80047 -10.75142 -10.49605 -10.39871 -10.14341 -9.78525 -9.67174 -9.34265 -8.65074 -8.27152 -7.58464 -6.53438 -5.82763 -3.95291 3.34988 3.43818 3.46475 4.47274 4.65227 5.22278 5.31650 5.43074 5.56491 5.71992 5.79197 5.92548 5.93958 6.02701 6.13926 6.18710 6.22918 6.28585 6.42392 6.46796 6.55448 6.68515 6.85126 6.90618 7.05986 7.24253 7.55564 7.76982 7.92457 7.94416 8.08377 8.39157 8.75215 9.15798 9.24114 9.71208 11.20744 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.011058 C = 0.009396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.377300 B = 2531.458523 C = 2979.335029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.554 5.554 3 C 0.048 3.952 4 C 0.199 3.801 5 H 0.082 0.918 6 C -0.543 4.543 7 H 0.051 0.949 8 C 0.081 3.919 9 N -0.844 5.844 10 Si 0.879 3.121 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.658 5.658 15 C 0.069 3.931 16 C -0.061 4.061 17 C -0.142 4.142 18 C -0.131 4.131 19 C 0.088 3.912 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.012 0.988 23 H 0.016 0.984 24 H 0.067 0.933 25 H 0.254 0.746 26 H 0.327 0.673 27 H -0.003 1.003 28 H 0.049 0.951 29 H 0.018 0.982 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 -5.209 -5.744 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.277 5.277 3 C -0.080 4.080 4 C 0.092 3.908 5 H 0.099 0.901 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.125 4.125 9 N -0.479 5.479 10 Si 0.707 3.293 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.290 5.290 15 C -0.061 4.061 16 C -0.062 4.062 17 C -0.199 4.199 18 C -0.189 4.189 19 C -0.042 4.042 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.031 0.969 23 H 0.034 0.966 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.015 0.985 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -4.673 -5.925 -4.916 9.006 hybrid contribution -0.773 1.810 -0.935 2.178 sum -5.446 -4.115 -5.851 8.991 Atomic orbital electron populations 1.22298 0.88398 1.01278 0.99474 1.59034 1.05979 1.14303 1.48424 1.22839 1.01304 0.85550 0.98321 1.19550 0.81704 0.99051 0.90484 0.90068 1.21228 1.02423 1.03544 1.31044 0.93114 1.24964 0.96117 0.95789 0.95646 1.70132 1.05743 1.32743 1.39245 0.86779 0.77861 0.84584 0.80087 1.20103 1.21152 1.21228 1.60779 1.41770 1.11929 1.14496 1.21710 0.97115 0.93646 0.93627 1.20436 0.93144 0.94705 0.97920 1.22332 1.05357 0.98155 0.94045 1.21837 1.01149 0.97310 0.98612 1.21024 0.95770 0.96269 0.91136 0.92404 0.91619 0.96911 0.96606 0.91475 0.93559 0.85487 0.98522 0.93241 0.96272 0.89100 0.89546 0.93732 0.92445 0.93122 0.92317 0.97782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.48 60.07 0.57 1.09 16 2 N -0.55 -10.50 3.08 -248.02 -0.76 -11.26 16 3 C 0.05 1.02 4.88 -4.50 -0.02 1.00 16 4 C 0.20 4.86 1.80 -69.51 -0.13 4.74 16 5 H 0.08 2.18 4.19 -51.93 -0.22 1.96 16 6 C -0.54 -14.65 8.32 -34.44 -0.29 -14.93 16 7 H 0.05 1.37 7.44 -52.49 -0.39 0.98 16 8 C 0.08 2.22 5.37 -17.82 -0.10 2.13 16 9 N -0.84 -23.87 12.64 55.43 0.70 -23.17 16 10 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.66 -15.52 4.80 -108.88 -0.52 -16.04 16 15 C 0.07 1.38 5.27 -4.31 -0.02 1.35 16 16 C -0.06 -1.12 0.77 -154.84 -0.12 -1.24 16 17 C -0.14 -2.91 7.38 37.16 0.27 -2.64 16 18 C -0.13 -1.97 7.96 37.16 0.30 -1.67 16 19 C 0.09 1.55 3.96 -6.55 -0.03 1.52 16 20 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 21 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.02 0.34 6.77 -51.93 -0.35 -0.01 16 24 H 0.07 1.45 7.00 -51.93 -0.36 1.09 16 25 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.33 7.99 8.50 -39.29 -0.33 7.66 16 27 H 0.00 -0.06 6.52 -51.93 -0.34 -0.40 16 28 H 0.05 0.96 7.68 -51.93 -0.40 0.56 16 29 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 30 H 0.09 2.18 6.58 -51.92 -0.34 1.84 16 31 H 0.09 1.93 4.64 -51.93 -0.24 1.69 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.00 0.08 7.60 -51.93 -0.39 -0.32 16 LS Contribution 265.81 15.07 4.01 4.01 Total: -1.00 -27.47 265.81 -6.99 -34.45 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.83 Total: 4.68 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 0.44 Total: -8.65 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.58 Total: -50.47 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.47 -6.99 -34.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.705 kcal (2) G-P(sol) polarization free energy of solvation -27.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds