Wall clock time and date at job start Mon Mar 30 2020 03:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47687 * 110.99712 * 2 1 4 4 C 1.50782 * 108.09115 * 151.97324 * 3 2 1 5 5 H 1.09000 * 108.99841 * 333.99138 * 4 3 2 6 6 C 1.50702 * 108.99194 * 215.16470 * 4 3 2 7 7 H 1.07998 * 120.00062 * 0.02562 * 6 4 3 8 8 C 1.37883 * 119.99998 * 180.02562 * 6 4 3 9 9 N 1.31514 * 119.99550 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 120.00157 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46868 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47166 * 119.99910 * 10 8 6 13 13 H 1.48498 * 109.46914 * 240.00147 * 10 8 6 14 14 N 1.47751 * 111.90589 * 94.62259 * 4 3 2 15 15 C 1.48062 * 113.78452 * 318.87312 * 14 4 3 16 16 C 1.50751 * 112.94273 * 318.28540 * 15 14 4 17 17 C 1.52999 * 109.55728 * 332.81152 * 16 15 14 18 18 C 1.52997 * 109.55903 * 212.49646 * 16 15 14 19 19 C 1.40084 * 111.00114 * 231.35717 * 2 1 3 20 20 H 1.09004 * 109.46522 * 188.64656 * 1 2 3 21 21 H 1.08998 * 109.47276 * 308.64310 * 1 2 3 22 22 H 1.08997 * 109.46857 * 68.64975 * 1 2 3 23 23 H 1.08994 * 109.74130 * 271.62420 * 3 2 1 24 24 H 1.08998 * 109.74007 * 32.27867 * 3 2 1 25 25 H 0.97008 * 119.99909 * 179.97438 * 9 8 6 26 26 H 1.00897 * 111.00181 * 84.94419 * 14 4 3 27 27 H 1.08995 * 108.79408 * 79.18211 * 15 14 4 28 28 H 1.09000 * 108.79025 * 197.51207 * 15 14 4 29 29 H 1.08997 * 109.47527 * 218.57207 * 17 16 15 30 30 H 1.09007 * 109.47263 * 338.57214 * 17 16 15 31 31 H 1.09001 * 109.47235 * 98.56613 * 17 16 15 32 32 H 1.09005 * 109.47086 * 300.53200 * 18 16 15 33 33 H 1.09002 * 109.47570 * 60.52827 * 18 16 15 34 34 H 1.08997 * 109.46925 * 180.53333 * 18 16 15 35 35 H 1.08994 * 109.07270 * 308.66347 * 19 2 1 36 36 H 1.08996 * 109.07703 * 67.62548 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9982 1.3788 0.0000 4 6 3.3472 1.3626 0.6735 5 1 3.3879 0.5219 1.3661 6 6 3.5246 2.6437 1.4470 7 1 2.7410 3.3869 1.4479 8 6 4.6874 2.8671 2.1535 9 7 5.6414 1.9618 2.1528 10 14 4.9070 4.4547 3.1129 11 1 3.6971 5.3009 2.9534 12 1 5.1061 4.1408 4.5506 13 1 6.0927 5.1849 2.5969 14 7 4.4491 1.2355 -0.3026 15 6 4.1727 0.2731 -1.3932 16 6 3.5027 -0.9875 -0.9088 17 6 3.8837 -1.2416 0.5510 18 6 3.9510 -2.1695 -1.7706 19 6 1.9711 -0.8167 -1.0215 20 1 -0.3632 -1.0161 0.1545 21 1 -0.3634 0.6417 0.8026 22 1 -0.3633 0.3741 -0.9571 23 1 2.1030 1.7329 -1.0255 24 1 1.3204 2.0333 0.5479 25 1 6.4596 2.1191 2.6495 26 1 4.7097 2.1370 -0.6732 27 1 3.5279 0.7526 -2.1297 28 1 5.1144 0.0060 -1.8728 29 1 4.0304 -2.3102 0.7076 30 1 4.8068 -0.7103 0.7834 31 1 3.0857 -0.8851 1.2022 32 1 3.6824 -1.9835 -2.8105 33 1 5.0315 -2.2887 -1.6902 34 1 3.4585 -3.0784 -1.4251 35 1 1.4979 -1.7966 -0.9590 36 1 1.7327 -0.3681 -1.9858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218996579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:37 Heat of formation + Delta-G solvation = 13.225998 kcal Electronic energy + Delta-G solvation = -15623.796392 eV Core-core repulsion = 13336.056989 eV Total energy + Delta-G solvation = -2287.739403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02321 -36.32765 -35.75145 -33.41896 -30.13739 -28.15293 -27.96182 -27.16645 -25.48446 -23.55772 -21.08213 -19.48430 -18.55407 -16.74492 -16.58976 -16.26694 -16.04366 -15.75941 -15.00585 -14.36087 -14.10221 -13.68882 -13.58718 -13.25773 -13.04095 -12.82029 -12.72481 -12.43827 -12.39584 -12.26946 -12.09446 -11.90370 -11.39555 -11.26894 -11.05495 -10.60852 -10.29814 -9.06816 -8.32979 -7.91645 -6.10139 1.43729 1.47028 1.56001 2.50034 3.18230 3.27788 3.81641 3.89376 4.05504 4.25961 4.47600 4.50700 4.55691 4.63663 4.69426 4.81297 4.84014 4.87941 4.97029 5.01427 5.08699 5.19454 5.20304 5.36645 5.47273 5.58647 5.78051 5.82527 6.07129 6.29005 6.36720 6.57943 6.81248 7.22805 7.30570 7.59981 9.10995 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.011058 C = 0.009396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.377300 B = 2531.458523 C = 2979.335029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.567 5.567 3 C 0.060 3.940 4 C 0.205 3.795 5 H 0.058 0.942 6 C -0.560 4.560 7 H 0.044 0.956 8 C 0.038 3.962 9 N -0.871 5.871 10 Si 0.941 3.059 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.673 5.673 15 C 0.070 3.930 16 C -0.063 4.063 17 C -0.128 4.128 18 C -0.124 4.124 19 C 0.089 3.911 20 H 0.081 0.919 21 H 0.063 0.937 22 H 0.023 0.977 23 H 0.010 0.990 24 H 0.059 0.941 25 H 0.253 0.747 26 H 0.317 0.683 27 H 0.000 1.000 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 -6.029 -6.556 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.291 5.291 3 C -0.068 4.068 4 C 0.098 3.902 5 H 0.075 0.925 6 C -0.600 4.600 7 H 0.062 0.938 8 C -0.166 4.166 9 N -0.507 5.507 10 Si 0.768 3.232 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.303 5.303 15 C -0.059 4.059 16 C -0.064 4.064 17 C -0.186 4.186 18 C -0.182 4.182 19 C -0.040 4.040 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.042 0.958 23 H 0.029 0.971 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.133 0.867 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -5.682 -6.753 -5.735 10.525 hybrid contribution -0.482 2.037 -0.683 2.202 sum -6.164 -4.716 -6.417 10.071 Atomic orbital electron populations 1.22365 0.86090 1.02869 1.00031 1.58965 1.08106 1.12635 1.49343 1.22503 0.99660 0.87334 0.97329 1.19324 0.83495 0.96874 0.90539 0.92510 1.21573 1.02317 1.04450 1.31611 0.93782 1.25598 0.95910 0.98546 0.96535 1.70261 1.06048 1.34331 1.40070 0.85799 0.77676 0.81106 0.78609 1.19789 1.21025 1.20985 1.60617 1.42040 1.11913 1.15720 1.21790 0.97718 0.93754 0.92602 1.20513 0.93926 0.95085 0.96879 1.22076 1.02509 0.98548 0.95428 1.21768 1.01197 0.96310 0.98900 1.21067 0.95076 0.97138 0.90769 0.90046 0.91784 0.95849 0.97135 0.92254 0.93734 0.86652 0.98242 0.92717 0.94374 0.93157 0.91562 0.91988 0.92623 0.91282 0.89811 0.97454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.48 127.69 1.21 2.18 16 2 N -0.57 -20.60 3.08 -938.59 -2.89 -23.49 16 3 C 0.06 2.58 4.88 85.43 0.42 3.00 16 4 C 0.20 10.20 1.80 43.29 0.08 10.28 16 5 H 0.06 3.14 4.19 -2.39 -0.01 3.13 16 6 C -0.56 -30.79 8.32 25.60 0.21 -30.58 16 7 H 0.04 2.41 7.44 -2.91 -0.02 2.39 16 8 C 0.04 2.11 5.37 84.66 0.45 2.56 16 9 N -0.87 -50.35 12.64 21.45 0.27 -50.08 16 10 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 N -0.67 -32.27 4.80 -498.38 -2.39 -34.66 16 15 C 0.07 2.78 5.27 85.35 0.45 3.23 16 16 C -0.06 -2.20 0.77 -52.40 -0.04 -2.24 16 17 C -0.13 -5.22 7.38 71.98 0.53 -4.69 16 18 C -0.12 -3.32 7.96 71.98 0.57 -2.75 16 19 C 0.09 2.90 3.96 88.05 0.35 3.24 16 20 H 0.08 1.96 8.06 -2.38 -0.02 1.94 16 21 H 0.06 1.84 7.84 -2.39 -0.02 1.82 16 22 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.01 0.45 6.77 -2.39 -0.02 0.44 16 24 H 0.06 2.58 7.00 -2.39 -0.02 2.56 16 25 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 26 H 0.32 15.89 8.50 -89.70 -0.76 15.12 16 27 H 0.00 -0.02 6.52 -2.39 -0.02 -0.03 16 28 H 0.05 2.07 7.68 -2.39 -0.02 2.06 16 29 H 0.04 1.35 7.72 -2.39 -0.02 1.33 16 30 H 0.05 2.45 6.58 -2.38 -0.02 2.44 16 31 H 0.07 2.96 4.64 -2.39 -0.01 2.95 16 32 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 34 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 35 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 36 H 0.01 0.25 7.60 -2.39 -0.02 0.23 16 Total: -1.00 -59.08 265.81 1.55 -57.54 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.29 Total: 20.71 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.24 Total: -15.77 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -5.01 Total: -108.24 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -59.08 1.55 -57.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.764 kcal (2) G-P(sol) polarization free energy of solvation -59.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds