Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47908 * 111.00183 * 2 1 4 4 C 1.50805 * 108.49393 * 153.77915 * 3 2 1 5 5 C 1.53002 * 108.95836 * 331.87878 * 4 3 2 6 6 C 1.53002 * 108.95360 * 213.22912 * 4 3 2 7 7 C 1.53698 * 112.09816 * 92.55467 * 4 3 2 8 8 N 1.48065 * 112.39514 * 318.60047 * 7 4 3 9 9 C 1.44508 * 113.89580 * 318.16890 * 8 7 4 10 10 C 1.40019 * 110.99866 * 232.03071 * 2 1 3 11 11 H 1.08997 * 108.95832 * 67.42704 * 10 2 1 12 12 C 1.50703 * 108.96053 * 308.68294 * 10 2 1 13 13 H 1.07998 * 119.99693 * 354.38435 * 12 10 2 14 14 C 1.37868 * 120.00141 * 174.37850 * 12 10 2 15 15 N 1.31520 * 120.00274 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00031 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47409 * 90.00198 * 16 14 12 18 18 H 1.48508 * 109.47136 * 210.00015 * 16 14 12 19 19 H 1.48497 * 109.46961 * 329.99615 * 16 14 12 20 20 H 1.09002 * 109.47069 * 67.13273 * 1 2 3 21 21 H 1.09000 * 109.46904 * 187.13380 * 1 2 3 22 22 H 1.09000 * 109.46885 * 307.13922 * 1 2 3 23 23 H 1.08999 * 109.63075 * 34.07892 * 3 2 1 24 24 H 1.08997 * 109.63769 * 273.48037 * 3 2 1 25 25 H 1.08995 * 109.47037 * 159.16692 * 5 4 3 26 26 H 1.08995 * 109.46697 * 279.17239 * 5 4 3 27 27 H 1.08998 * 109.46683 * 39.16348 * 5 4 3 28 28 H 1.08997 * 109.46984 * 297.41280 * 6 4 3 29 29 H 1.08994 * 109.47230 * 57.41476 * 6 4 3 30 30 H 1.08999 * 109.46566 * 177.41633 * 6 4 3 31 31 H 1.09001 * 108.88368 * 79.32398 * 7 4 3 32 32 H 1.09003 * 108.87864 * 197.88168 * 7 4 3 33 33 H 1.00901 * 110.99787 * 84.38962 * 8 7 4 34 34 H 1.08995 * 109.60300 * 334.57421 * 9 8 7 35 35 H 1.09003 * 109.63215 * 214.14443 * 9 8 7 36 36 H 0.96990 * 120.00362 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3683 1.3676 0.6319 5 6 3.4436 0.2112 1.6309 6 6 3.5823 2.6839 1.3819 7 6 4.4848 1.1999 -0.4110 8 7 4.1407 0.2032 -1.4505 9 6 3.4992 -0.9840 -0.9336 10 6 1.9708 -0.8042 -1.0305 11 1 1.7282 -0.3445 -1.9886 12 6 1.3146 -2.1590 -0.9581 13 1 0.6543 -2.3959 -0.1369 14 6 1.5572 -3.0959 -1.9400 15 7 2.3616 -2.8076 -2.9397 16 14 0.7432 -4.7748 -1.8505 17 1 -0.5599 -4.7318 -2.5611 18 1 1.6227 -5.7861 -2.4903 19 1 0.5201 -5.1416 -0.4289 20 1 -0.3633 0.3994 -0.9469 21 1 -0.3633 -1.0197 0.1276 22 1 -0.3633 0.6205 0.8192 23 1 1.3365 2.0274 0.5753 24 1 2.0722 1.7451 -1.0247 25 1 4.4874 -0.0441 1.8132 26 1 2.9734 0.5094 2.5679 27 1 2.9234 -0.6555 1.2231 28 1 3.5535 3.5134 0.6753 29 1 2.7944 2.8114 2.1242 30 1 4.5515 2.6646 1.8802 31 1 4.6667 2.1616 -0.8908 32 1 5.3957 0.8810 0.0957 33 1 3.5901 0.6222 -2.1849 34 1 3.7844 -1.1296 0.1082 35 1 3.8031 -1.8500 -1.5218 36 1 2.5320 -3.4665 -3.6307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218996753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 28.354518 kcal Electronic energy + Delta-G solvation = -15705.123631 eV Core-core repulsion = 13418.040250 eV Total energy + Delta-G solvation = -2287.083381 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.51826 -35.15000 -33.52385 -32.07823 -28.22914 -26.97775 -26.44260 -25.16991 -23.71431 -21.91338 -19.70816 -17.99119 -16.63014 -15.51571 -14.87886 -14.65297 -14.28894 -14.11232 -13.04142 -12.68058 -12.56037 -12.19297 -12.04723 -11.88150 -11.52111 -11.18388 -11.03656 -10.90268 -10.72339 -10.66200 -10.41161 -10.21782 -9.88098 -9.76610 -9.43412 -9.07750 -8.39347 -7.21912 -6.98033 -6.01439 -4.06678 3.29571 3.37085 3.40103 4.39729 4.95323 5.16689 5.28618 5.30924 5.49304 5.66286 5.88721 5.98295 6.03468 6.06962 6.16093 6.17862 6.30272 6.39303 6.44471 6.57307 6.67439 6.74308 6.77025 6.84332 7.07088 7.33097 7.41264 7.64939 7.84531 8.08257 8.23214 8.37308 8.48175 8.75122 9.04017 9.58703 11.04631 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.010772 C = 0.009688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.376058 B = 2598.745827 C = 2889.474473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.540 5.540 3 C 0.070 3.930 4 C -0.094 4.094 5 C -0.147 4.147 6 C -0.135 4.135 7 C 0.073 3.927 8 N -0.699 5.699 9 C 0.059 3.941 10 C 0.193 3.807 11 H -0.011 1.011 12 C -0.512 4.512 13 H 0.064 0.936 14 C 0.061 3.939 15 N -0.884 5.884 16 Si 0.893 3.107 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.009 0.991 21 H 0.080 0.920 22 H 0.038 0.962 23 H 0.060 0.940 24 H 0.024 0.976 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.114 0.886 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.331 0.669 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 7.354 5.692 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.263 5.263 3 C -0.058 4.058 4 C -0.096 4.096 5 C -0.204 4.204 6 C -0.193 4.193 7 C -0.057 4.057 8 N -0.327 5.327 9 C -0.070 4.070 10 C 0.084 3.916 11 H 0.006 0.994 12 C -0.551 4.551 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.522 5.522 16 Si 0.721 3.279 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.028 0.972 21 H 0.098 0.902 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.648 6.753 5.933 9.139 hybrid contribution -1.561 -0.104 -0.646 1.692 sum 0.087 6.649 5.287 8.495 Atomic orbital electron populations 1.22211 0.88303 1.02376 0.97533 1.59341 1.06716 1.09423 1.50867 1.21784 0.95151 0.90845 0.98039 1.20982 0.95822 0.95638 0.97202 1.22347 1.00010 1.00883 0.97174 1.21913 1.01080 0.96742 0.99565 1.22442 0.96252 0.94742 0.92223 1.59756 1.52844 1.07792 1.12346 1.22444 0.92744 0.91972 0.99823 1.18809 0.93647 0.92148 0.87020 0.99360 1.21220 1.27802 0.97507 1.08534 0.91774 1.24971 0.95221 0.98571 0.95370 1.69948 1.35676 1.34894 1.11671 0.86577 0.79140 0.83976 0.78192 1.20908 1.21234 1.19858 0.97211 0.90160 0.94277 0.92193 0.95792 0.94806 0.94582 0.86789 0.93475 0.93115 0.93049 0.93091 0.92240 0.85092 0.91529 0.88326 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 9.07 60.07 0.54 1.41 16 2 N -0.54 -11.40 2.40 -241.15 -0.58 -11.98 16 3 C 0.07 1.28 4.65 -4.37 -0.02 1.26 16 4 C -0.09 -1.57 0.72 -155.24 -0.11 -1.68 16 5 C -0.15 -2.62 7.06 37.16 0.26 -2.36 16 6 C -0.13 -1.83 7.98 37.16 0.30 -1.53 16 7 C 0.07 1.28 5.50 -2.82 -0.02 1.27 16 8 N -0.70 -14.67 6.52 -113.54 -0.74 -15.41 16 9 C 0.06 1.39 5.40 -4.48 -0.02 1.37 16 10 C 0.19 4.72 1.24 -71.79 -0.09 4.63 16 11 H -0.01 -0.30 7.57 -51.93 -0.39 -0.70 16 12 C -0.51 -13.59 7.58 -34.44 -0.26 -13.85 16 13 H 0.06 1.70 6.17 -52.49 -0.32 1.37 16 14 C 0.06 1.65 5.17 -17.82 -0.09 1.56 16 15 N -0.88 -24.86 11.61 55.43 0.64 -24.22 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 21 H 0.08 1.69 5.85 -51.93 -0.30 1.38 16 22 H 0.04 0.66 7.89 -51.93 -0.41 0.25 16 23 H 0.06 1.00 7.23 -51.93 -0.38 0.62 16 24 H 0.02 0.46 7.12 -51.93 -0.37 0.09 16 25 H 0.03 0.57 7.57 -51.93 -0.39 0.18 16 26 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 27 H 0.11 2.40 3.96 -51.93 -0.21 2.19 16 28 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.05 0.66 8.00 -51.93 -0.42 0.24 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 32 H 0.06 1.03 7.62 -51.93 -0.40 0.63 16 33 H 0.33 7.14 7.49 -39.29 -0.29 6.85 16 34 H 0.07 1.54 4.29 -51.93 -0.22 1.32 16 35 H 0.10 2.69 6.09 -51.93 -0.32 2.37 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 261.18 15.07 3.94 3.94 Total: -1.00 -26.98 261.18 -6.92 -33.89 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.64 Total: 5.71 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 0.49 Total: -7.93 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.68 Total: -51.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.98 -6.92 -33.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.245 kcal (2) G-P(sol) polarization free energy of solvation -26.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds