Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47908 * 111.00183 * 2 1 4 4 C 1.50805 * 108.49393 * 153.77915 * 3 2 1 5 5 C 1.53002 * 108.95836 * 331.87878 * 4 3 2 6 6 C 1.53002 * 108.95360 * 213.22912 * 4 3 2 7 7 C 1.53698 * 112.09816 * 92.55467 * 4 3 2 8 8 N 1.48065 * 112.39514 * 318.60047 * 7 4 3 9 9 C 1.44508 * 113.89580 * 318.16890 * 8 7 4 10 10 C 1.40019 * 110.99866 * 232.03071 * 2 1 3 11 11 H 1.08997 * 108.95832 * 67.42704 * 10 2 1 12 12 C 1.50703 * 108.96053 * 308.68294 * 10 2 1 13 13 H 1.07998 * 119.99693 * 354.38435 * 12 10 2 14 14 C 1.37868 * 120.00141 * 174.37850 * 12 10 2 15 15 N 1.31520 * 120.00274 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00031 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47409 * 90.00198 * 16 14 12 18 18 H 1.48508 * 109.47136 * 210.00015 * 16 14 12 19 19 H 1.48497 * 109.46961 * 329.99615 * 16 14 12 20 20 H 1.09002 * 109.47069 * 67.13273 * 1 2 3 21 21 H 1.09000 * 109.46904 * 187.13380 * 1 2 3 22 22 H 1.09000 * 109.46885 * 307.13922 * 1 2 3 23 23 H 1.08999 * 109.63075 * 34.07892 * 3 2 1 24 24 H 1.08997 * 109.63769 * 273.48037 * 3 2 1 25 25 H 1.08995 * 109.47037 * 159.16692 * 5 4 3 26 26 H 1.08995 * 109.46697 * 279.17239 * 5 4 3 27 27 H 1.08998 * 109.46683 * 39.16348 * 5 4 3 28 28 H 1.08997 * 109.46984 * 297.41280 * 6 4 3 29 29 H 1.08994 * 109.47230 * 57.41476 * 6 4 3 30 30 H 1.08999 * 109.46566 * 177.41633 * 6 4 3 31 31 H 1.09001 * 108.88368 * 79.32398 * 7 4 3 32 32 H 1.09003 * 108.87864 * 197.88168 * 7 4 3 33 33 H 1.00901 * 110.99787 * 84.38962 * 8 7 4 34 34 H 1.08995 * 109.60300 * 334.57421 * 9 8 7 35 35 H 1.09003 * 109.63215 * 214.14443 * 9 8 7 36 36 H 0.96990 * 120.00362 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3683 1.3676 0.6319 5 6 3.4436 0.2112 1.6309 6 6 3.5823 2.6839 1.3819 7 6 4.4848 1.1999 -0.4110 8 7 4.1407 0.2032 -1.4505 9 6 3.4992 -0.9840 -0.9336 10 6 1.9708 -0.8042 -1.0305 11 1 1.7282 -0.3445 -1.9886 12 6 1.3146 -2.1590 -0.9581 13 1 0.6543 -2.3959 -0.1369 14 6 1.5572 -3.0959 -1.9400 15 7 2.3616 -2.8076 -2.9397 16 14 0.7432 -4.7748 -1.8505 17 1 -0.5599 -4.7318 -2.5611 18 1 1.6227 -5.7861 -2.4903 19 1 0.5201 -5.1416 -0.4289 20 1 -0.3633 0.3994 -0.9469 21 1 -0.3633 -1.0197 0.1276 22 1 -0.3633 0.6205 0.8192 23 1 1.3365 2.0274 0.5753 24 1 2.0722 1.7451 -1.0247 25 1 4.4874 -0.0441 1.8132 26 1 2.9734 0.5094 2.5679 27 1 2.9234 -0.6555 1.2231 28 1 3.5535 3.5134 0.6753 29 1 2.7944 2.8114 2.1242 30 1 4.5515 2.6646 1.8802 31 1 4.6667 2.1616 -0.8908 32 1 5.3957 0.8810 0.0957 33 1 3.5901 0.6222 -2.1849 34 1 3.7844 -1.1296 0.1082 35 1 3.8031 -1.8500 -1.5218 36 1 2.5320 -3.4665 -3.6307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218996753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 10.330442 kcal Electronic energy + Delta-G solvation = -15705.905214 eV Core-core repulsion = 13418.040250 eV Total energy + Delta-G solvation = -2287.864964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11930 -36.76090 -35.25362 -33.95783 -29.97500 -28.48481 -27.90290 -26.77101 -25.47156 -23.56726 -21.51241 -19.42336 -18.62376 -17.24715 -16.56469 -16.33334 -15.90359 -15.77914 -14.66388 -14.21840 -14.15546 -13.96376 -13.49122 -13.27373 -12.96502 -12.88155 -12.78596 -12.54775 -12.46593 -12.25622 -11.98935 -11.95896 -11.47477 -11.29195 -11.07216 -10.99631 -10.42337 -8.92820 -8.72750 -8.08751 -6.20212 1.41254 1.43233 1.53001 2.42602 3.18036 3.38947 3.66525 3.91385 4.09532 4.27375 4.54505 4.57652 4.60434 4.68756 4.73252 4.83131 4.88480 4.93778 5.03710 5.07672 5.19193 5.27349 5.28077 5.32496 5.42984 5.50723 5.69708 5.77533 5.93205 6.18870 6.48476 6.54654 6.66196 6.91353 7.04567 7.50020 8.96257 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.010772 C = 0.009688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.376058 B = 2598.745827 C = 2889.474473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.544 5.544 3 C 0.070 3.930 4 C -0.092 4.092 5 C -0.143 4.143 6 C -0.127 4.127 7 C 0.072 3.928 8 N -0.706 5.706 9 C 0.075 3.925 10 C 0.211 3.789 11 H -0.056 1.056 12 C -0.525 4.525 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.267 1.267 20 H -0.001 1.001 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.012 0.988 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.325 0.675 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 8.532 7.302 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.267 5.267 3 C -0.058 4.058 4 C -0.094 4.094 5 C -0.200 4.200 6 C -0.185 4.185 7 C -0.057 4.057 8 N -0.335 5.335 9 C -0.055 4.055 10 C 0.100 3.900 11 H -0.039 1.039 12 C -0.563 4.563 13 H 0.080 0.920 14 C -0.186 4.186 15 N -0.551 5.551 16 Si 0.781 3.219 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.192 1.192 20 H 0.018 0.982 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.030 0.970 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.599 7.950 7.565 11.090 hybrid contribution -1.540 -0.417 -1.128 1.954 sum 0.059 7.533 6.437 9.909 Atomic orbital electron populations 1.22205 0.87677 1.02018 0.98320 1.59342 1.07361 1.10997 1.49007 1.21913 0.96605 0.89258 0.97994 1.20961 0.94327 0.97351 0.96784 1.22219 0.99991 0.99904 0.97863 1.21827 1.02244 0.94700 0.99698 1.22564 0.96729 0.94605 0.91818 1.59627 1.52129 1.08169 1.13529 1.22066 0.92335 0.91893 0.99212 1.18503 0.94083 0.91574 0.85831 1.03865 1.21547 1.27718 0.98729 1.08343 0.91991 1.25713 0.95794 1.01992 0.95143 1.70090 1.36880 1.35859 1.12285 0.85600 0.78120 0.79816 0.78342 1.20531 1.21150 1.19156 0.98250 0.91865 0.90801 0.89792 0.96984 0.94268 0.93106 0.90233 0.92180 0.92095 0.91706 0.90896 0.91666 0.85755 0.90932 0.92424 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.77 9.07 127.69 1.16 2.93 16 2 N -0.54 -22.71 2.40 -916.86 -2.20 -24.91 16 3 C 0.07 2.41 4.65 85.40 0.40 2.81 16 4 C -0.09 -2.83 0.72 -52.66 -0.04 -2.86 16 5 C -0.14 -4.76 7.06 71.98 0.51 -4.25 16 6 C -0.13 -2.88 7.98 71.98 0.57 -2.30 16 7 C 0.07 2.37 5.50 86.31 0.48 2.85 16 8 N -0.71 -29.79 6.52 -513.13 -3.35 -33.14 16 9 C 0.07 3.61 5.40 87.16 0.47 4.08 16 10 C 0.21 10.54 1.24 45.82 0.06 10.59 16 11 H -0.06 -3.23 7.57 -2.39 -0.02 -3.25 16 12 C -0.52 -28.49 7.58 25.60 0.19 -28.29 16 13 H 0.06 3.33 6.17 -2.91 -0.02 3.31 16 14 C 0.01 0.72 5.17 84.65 0.44 1.16 16 15 N -0.91 -52.97 11.61 21.44 0.25 -52.73 16 16 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 21 H 0.06 2.65 5.85 -2.39 -0.01 2.64 16 22 H 0.07 2.34 7.89 -2.39 -0.02 2.32 16 23 H 0.08 2.51 7.23 -2.39 -0.02 2.49 16 24 H 0.01 0.45 7.12 -2.39 -0.02 0.43 16 25 H 0.04 1.24 7.57 -2.39 -0.02 1.22 16 26 H 0.05 1.52 7.92 -2.39 -0.02 1.50 16 27 H 0.08 3.27 3.96 -2.39 -0.01 3.26 16 28 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 29 H 0.06 1.29 8.00 -2.39 -0.02 1.27 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 2.10 7.95 -2.39 -0.02 2.08 16 32 H 0.06 2.09 7.62 -2.39 -0.02 2.08 16 33 H 0.33 14.31 7.49 -89.69 -0.67 13.64 16 34 H 0.07 3.40 4.29 -2.39 -0.01 3.39 16 35 H 0.06 3.27 6.09 -2.39 -0.01 3.25 16 36 H 0.26 14.46 8.31 -92.72 -0.77 13.69 16 Total: -1.00 -59.11 261.18 1.35 -57.76 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.39 Total: 20.52 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.23 Total: -13.29 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -5.30 Total: -110.78 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -59.11 1.35 -57.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.090 kcal (2) G-P(sol) polarization free energy of solvation -59.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds