Wall clock time and date at job start Mon Mar 30 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46852 * 111.00424 * 2 1 4 4 C 1.53033 * 109.52664 * 185.84033 * 3 2 1 5 5 C 1.53120 * 109.27660 * 300.81802 * 4 3 2 6 6 C 1.52993 * 109.52581 * 297.68356 * 5 4 3 7 7 C 1.53005 * 109.51960 * 177.55536 * 5 4 3 8 8 N 1.46505 * 109.46904 * 180.12723 * 7 5 4 9 9 C 1.36931 * 119.99788 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 7 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 C 1.53122 * 109.21231 * 57.62601 * 5 4 3 18 18 C 1.46846 * 111.00012 * 124.20818 * 2 1 3 19 19 H 1.09000 * 109.47190 * 59.99756 * 1 2 3 20 20 H 1.09002 * 109.47759 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47195 * 300.00566 * 1 2 3 22 22 H 1.09000 * 109.46380 * 65.81817 * 3 2 1 23 23 H 1.09000 * 109.44831 * 305.85209 * 3 2 1 24 24 H 1.09000 * 109.50626 * 180.87650 * 4 3 2 25 25 H 1.09001 * 109.50509 * 60.75905 * 4 3 2 26 26 H 1.08998 * 109.47247 * 299.87554 * 6 5 4 27 27 H 1.09006 * 109.46787 * 59.87217 * 6 5 4 28 28 H 1.08998 * 109.47377 * 179.87372 * 6 5 4 29 29 H 1.09003 * 109.46946 * 60.13482 * 7 5 4 30 30 H 1.08993 * 109.47679 * 300.13025 * 7 5 4 31 31 H 0.97000 * 119.99792 * 0.02562 * 8 7 5 32 32 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.50443 * 62.31357 * 17 5 4 34 34 H 1.09003 * 109.50119 * 182.43552 * 17 5 4 35 35 H 1.09003 * 109.46486 * 294.17482 * 18 2 1 36 36 H 1.09000 * 109.46195 * 54.15862 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5370 1.0144 6 6 3.7972 1.2375 2.3360 7 6 5.6361 0.4448 0.8404 8 7 6.2092 -0.3206 1.9503 9 6 7.5605 -0.5346 2.0086 10 1 8.2038 -0.1387 1.2367 11 6 8.1042 -1.2550 3.0633 12 7 7.3203 -1.7370 4.0043 13 14 9.9484 -1.5403 3.1470 14 1 10.5871 -0.4317 3.9008 15 1 10.2194 -2.8278 3.8357 16 1 10.5048 -1.5884 1.7710 17 6 3.5182 -0.8716 1.0224 18 6 1.9951 -0.7707 1.1338 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8900 22 1 1.7324 1.8609 0.9375 23 1 1.5634 1.9255 -0.8331 24 1 3.9099 2.3512 -0.1311 25 1 3.7813 0.8567 -1.0906 26 1 4.2231 2.2408 2.3284 27 1 2.7161 1.3027 2.4590 28 1 4.2232 0.6682 3.1621 29 1 6.0624 1.4480 0.8326 30 1 5.8643 -0.0543 -0.1012 31 1 5.6315 -0.6759 2.6438 32 1 7.7002 -2.2408 4.7411 33 1 3.7814 -1.3847 0.0975 34 1 3.9101 -1.4294 1.8730 35 1 1.7324 -0.2708 2.0660 36 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226350054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:06 Heat of formation + Delta-G solvation = 3.707005 kcal Electronic energy + Delta-G solvation = -14897.552283 eV Core-core repulsion = 12609.400106 eV Total energy + Delta-G solvation = -2288.152178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45812 -35.68121 -33.24878 -30.73256 -30.38579 -27.99524 -26.21743 -24.55957 -23.18970 -22.41998 -20.75312 -17.89439 -17.16301 -15.48649 -14.94579 -14.64374 -14.60924 -14.11639 -13.75992 -13.59319 -12.76733 -12.73162 -12.23775 -11.93534 -11.76028 -11.63979 -11.29904 -11.14862 -10.88496 -10.78740 -10.74477 -10.15757 -10.07222 -9.94752 -9.65355 -9.45342 -8.80403 -8.15419 -6.83100 -5.70975 -2.97882 3.47237 3.52305 3.54055 4.06653 4.64655 5.01997 5.07576 5.18695 5.28865 5.46112 5.51409 5.60580 5.67345 5.68029 5.76757 5.81430 5.89577 5.94934 6.06804 6.17715 6.23253 6.36012 6.43514 6.52761 6.58806 6.77420 6.81860 6.97177 7.01580 7.22754 7.24857 7.75999 8.49042 9.59986 10.20025 10.54925 11.52373 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063854 B = 0.006833 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.393369 B = 4097.050849 C = 4258.950733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.057 3.943 4 C -0.104 4.104 5 C -0.068 4.068 6 C -0.138 4.138 7 C 0.164 3.836 8 N -0.729 5.729 9 C -0.235 4.235 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 0.906 3.094 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.282 1.282 17 C -0.101 4.101 18 C 0.054 3.946 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.021 0.979 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.553 5.015 -6.670 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.068 4.068 6 C -0.195 4.195 7 C 0.036 3.964 8 N -0.374 5.374 9 C -0.366 4.366 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.585 5.585 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 C -0.138 4.138 18 C -0.073 4.073 19 H 0.083 0.917 20 H 0.084 0.916 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.219 0.781 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.217 4.782 -7.139 14.936 hybrid contribution 0.563 0.100 1.097 1.237 sum -11.654 4.881 -6.042 14.006 Atomic orbital electron populations 1.22330 0.88065 1.01730 1.00147 1.61937 1.06823 1.13966 1.44068 1.22105 0.96120 0.88917 0.99945 1.21591 0.93494 1.00041 0.99060 1.20742 0.96398 0.94988 0.94701 1.21888 0.99541 1.00394 0.97704 1.20669 0.89301 0.94655 0.91773 1.42418 1.05199 1.63720 1.26106 1.19260 0.84025 1.27480 1.05871 0.91310 1.24708 0.97672 1.01231 0.97533 1.69655 1.33613 1.41711 1.13538 0.86199 0.85540 0.77185 0.77355 1.21848 1.21849 1.20818 1.21577 0.92402 0.96725 1.03138 1.22191 0.96719 0.97418 0.90983 0.91743 0.91622 0.96090 0.94783 0.91449 0.91723 0.91245 0.93190 0.93896 0.91538 0.96569 0.96395 0.78112 0.93625 0.91463 0.90404 0.94774 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.06 0.58 0.85 16 2 N -0.54 -7.27 4.91 -242.96 -1.19 -8.46 16 3 C 0.06 0.73 5.22 -3.83 -0.02 0.71 16 4 C -0.10 -1.48 4.88 -26.65 -0.13 -1.61 16 5 C -0.07 -1.15 0.53 -154.38 -0.08 -1.23 16 6 C -0.14 -2.32 7.73 37.15 0.29 -2.03 16 7 C 0.16 3.43 5.16 -4.04 -0.02 3.41 16 8 N -0.73 -18.73 5.03 -59.90 -0.30 -19.03 16 9 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.94 -28.62 13.06 55.49 0.72 -27.90 16 13 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C -0.10 -1.71 4.68 -26.64 -0.12 -1.83 16 18 C 0.05 0.78 5.21 -3.83 -0.02 0.76 16 19 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 21 H 0.02 0.22 8.14 -51.92 -0.42 -0.21 16 22 H 0.03 0.44 6.51 -51.93 -0.34 0.10 16 23 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.64 4.93 -51.93 -0.26 0.38 16 28 H 0.07 1.29 6.87 -51.93 -0.36 0.93 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.38 10.24 5.39 -40.82 -0.22 10.02 16 32 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.50 6.95 -51.93 -0.36 1.14 16 35 H 0.03 0.49 6.52 -51.93 -0.34 0.16 16 36 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 275.09 15.07 4.15 4.15 Total: -1.00 -30.23 275.09 -7.49 -37.71 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.06 Total: 4.17 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.22 Total: -8.40 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.77 Total: -55.39 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.23 -7.49 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226350054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.421 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds