Wall clock time and date at job start Mon Mar 30 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 110.28478 * 2 1 4 4 C 1.46898 * 110.99673 * 302.12451 * 3 2 1 5 5 C 1.53006 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00290 * 0.02562 * 7 6 5 9 9 C 1.37887 * 120.00079 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99907 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99654 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47022 * 89.99986 * 11 9 7 13 13 H 1.48502 * 109.46769 * 209.99494 * 11 9 7 14 14 H 1.48495 * 109.47280 * 329.99669 * 11 9 7 15 15 C 1.54265 * 110.32420 * 122.12184 * 2 1 3 16 16 C 1.54377 * 105.05651 * 118.99894 * 15 2 1 17 17 N 1.48560 * 104.59776 * 23.85377 * 16 15 2 18 18 C 1.48564 * 104.22256 * 320.51711 * 17 16 15 19 19 H 1.08994 * 109.47087 * 59.30123 * 1 2 3 20 20 H 1.09005 * 109.46983 * 179.30620 * 1 2 3 21 21 H 1.08998 * 109.47412 * 299.29924 * 1 2 3 22 22 H 1.00897 * 110.99542 * 178.17593 * 3 2 1 23 23 H 1.09001 * 109.47392 * 60.00807 * 4 3 2 24 24 H 1.09001 * 109.47520 * 300.00529 * 4 3 2 25 25 H 1.09001 * 109.47002 * 299.99782 * 5 4 3 26 26 H 1.08993 * 109.46955 * 60.00219 * 5 4 3 27 27 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 28 28 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 29 29 H 0.96999 * 119.99682 * 180.02562 * 10 9 7 30 30 H 1.08991 * 110.32384 * 237.89398 * 15 2 1 31 31 H 1.09004 * 110.32326 * 0.10436 * 15 2 1 32 32 H 1.09003 * 110.41145 * 142.63502 * 16 15 2 33 33 H 1.08996 * 110.41307 * 265.07564 * 16 15 2 34 34 H 1.00900 * 111.00338 * 200.96014 * 17 16 15 35 35 H 1.08998 * 110.40892 * 280.70759 * 18 17 16 36 36 H 1.08986 * 110.41218 * 158.26014 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0393 1.3779 0.0000 4 6 1.5377 2.1245 -1.1615 5 6 2.0888 3.5514 -1.1273 6 6 1.5660 4.3292 -2.3366 7 6 2.1082 5.7348 -2.3026 8 1 2.7609 6.0425 -1.4991 9 6 1.7720 6.6278 -3.2980 10 7 2.2457 7.8543 -3.2685 11 14 0.6436 6.0953 -4.6882 12 1 -0.7672 6.3657 -4.3118 13 1 0.9819 6.8548 -5.9187 14 1 0.8192 4.6423 -4.9393 15 6 2.0658 -0.7692 1.2252 16 6 2.8828 -1.9400 0.6378 17 7 3.2721 -1.4806 -0.7204 18 6 2.0684 -0.7707 -1.2245 19 1 -0.3633 0.5246 -0.8836 20 1 -0.3633 -1.0276 -0.0124 21 1 -0.3634 0.5029 0.8962 22 1 3.0478 1.3906 0.0300 23 1 0.4486 2.1545 -1.1314 24 1 1.8624 1.6318 -2.0780 25 1 1.7644 4.0443 -0.2108 26 1 3.1779 3.5211 -1.1576 27 1 1.8900 3.8364 -3.2533 28 1 0.4768 4.3595 -2.3059 29 1 2.0088 8.4826 -3.9686 30 1 2.7067 -0.1244 1.8264 31 1 1.2388 -1.1483 1.8255 32 1 3.7690 -2.1272 1.2443 33 1 2.2684 -2.8379 0.5737 34 1 3.5055 -2.2627 -1.3136 35 1 1.3264 -1.4857 -1.5799 36 1 2.3413 -0.0775 -2.0200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230741924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:22 Heat of formation + Delta-G solvation = -9.426881 kcal Electronic energy + Delta-G solvation = -14308.361668 eV Core-core repulsion = 12019.639962 eV Total energy + Delta-G solvation = -2288.721706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49904 -35.53054 -33.40108 -31.77830 -29.99421 -29.07256 -26.60312 -25.23565 -22.61397 -21.37090 -20.01518 -19.12307 -16.77057 -16.50880 -15.93640 -15.19589 -14.42997 -14.22368 -13.79530 -13.36672 -13.27773 -12.66738 -12.51953 -12.12187 -11.90532 -11.74800 -11.63991 -11.36689 -11.15168 -10.90024 -10.81370 -10.49056 -9.87639 -9.66686 -9.51095 -9.12151 -8.79367 -8.49228 -8.14349 -5.99612 -3.96919 3.33421 3.40394 3.44353 4.10328 4.26411 4.49153 4.61498 4.68140 4.99350 5.06904 5.23372 5.34346 5.45698 5.52265 5.56669 5.63641 5.68302 5.83099 5.84998 5.95981 6.09150 6.16999 6.31001 6.49307 6.62887 6.68536 6.98367 7.07069 7.32750 7.42449 7.50528 7.69048 7.85578 8.60377 9.06467 9.63213 11.14110 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054494 B = 0.005669 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.691304 B = 4938.161539 C = 5024.381480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.111 3.889 3 N -0.672 5.672 4 C 0.051 3.949 5 C -0.099 4.099 6 C -0.012 4.012 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.065 3.935 10 N -0.905 5.905 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.266 1.266 15 C -0.115 4.115 16 C 0.033 3.967 17 N -0.664 5.664 18 C 0.000 4.000 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.345 0.655 23 H 0.068 0.932 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.013 0.987 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.334 0.666 35 H 0.041 0.959 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -20.277 5.887 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 N -0.303 5.303 4 C -0.077 4.077 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.545 5.545 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.191 1.191 15 C -0.154 4.154 16 C -0.097 4.097 17 N -0.292 5.292 18 C -0.131 4.131 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.164 0.836 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.149 0.851 35 H 0.059 0.941 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.228 -19.270 6.414 20.431 hybrid contribution -0.683 -1.306 -1.799 2.326 sum -2.911 -20.576 4.615 21.287 Atomic orbital electron populations 1.21897 0.93572 1.01087 1.03079 1.21627 0.94914 0.88807 0.92841 1.60757 1.15036 1.10889 1.43587 1.22245 1.00122 0.95199 0.90168 1.21431 0.99727 0.92113 1.00413 1.19539 0.95878 0.96088 0.93535 1.21170 1.29894 0.94168 1.10325 0.91021 1.25044 0.95898 0.94781 0.97875 1.69922 1.45406 1.04743 1.34396 0.86768 0.81344 0.79106 0.81990 1.20321 1.21453 1.19116 1.22442 0.99500 0.96202 0.97223 1.22959 0.98895 0.96389 0.91432 1.63689 1.33955 1.28044 1.03560 1.23821 0.91716 0.98268 0.99329 0.92058 0.92827 0.91457 0.83591 0.91317 0.95612 0.92049 0.93033 0.96915 0.97144 0.92817 0.89974 0.90977 0.90215 0.94487 0.85114 0.94091 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.95 37.16 0.30 -1.27 16 2 C 0.11 1.34 0.94 -130.22 -0.12 1.21 16 3 N -0.67 -9.81 6.05 -98.56 -0.60 -10.40 16 4 C 0.05 0.85 5.01 -3.82 -0.02 0.83 16 5 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 6 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 11 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 15 C -0.12 -1.20 6.39 -25.35 -0.16 -1.36 16 16 C 0.03 0.31 7.47 -2.18 -0.02 0.29 16 17 N -0.66 -7.15 7.62 -109.67 -0.84 -7.99 16 18 C 0.00 0.00 6.50 -2.18 -0.01 -0.02 16 19 H 0.06 0.74 6.41 -51.93 -0.33 0.41 16 20 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.35 5.12 8.72 -39.29 -0.34 4.78 16 23 H 0.07 1.14 6.32 -51.93 -0.33 0.81 16 24 H 0.03 0.43 6.21 -51.93 -0.32 0.11 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 31 H 0.07 0.66 7.71 -51.93 -0.40 0.26 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.33 3.01 8.92 -39.29 -0.35 2.66 16 35 H 0.04 0.44 7.85 -51.93 -0.41 0.03 16 36 H 0.09 1.15 6.02 -51.94 -0.31 0.84 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -30.85 280.71 -7.92 -38.77 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.10 Total: 2.22 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.73 Total: -16.59 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.66 Total: -46.14 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.85 -7.92 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230741924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.343 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds