Wall clock time and date at job start Mon Mar 30 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 110.28478 * 2 1 4 4 C 1.46898 * 110.99673 * 302.12451 * 3 2 1 5 5 C 1.53006 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00290 * 0.02562 * 7 6 5 9 9 C 1.37887 * 120.00079 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99907 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99654 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47022 * 89.99986 * 11 9 7 13 13 H 1.48502 * 109.46769 * 209.99494 * 11 9 7 14 14 H 1.48495 * 109.47280 * 329.99669 * 11 9 7 15 15 C 1.54265 * 110.32420 * 122.12184 * 2 1 3 16 16 C 1.54377 * 105.05651 * 118.99894 * 15 2 1 17 17 N 1.48560 * 104.59776 * 23.85377 * 16 15 2 18 18 C 1.48564 * 104.22256 * 320.51711 * 17 16 15 19 19 H 1.08994 * 109.47087 * 59.30123 * 1 2 3 20 20 H 1.09005 * 109.46983 * 179.30620 * 1 2 3 21 21 H 1.08998 * 109.47412 * 299.29924 * 1 2 3 22 22 H 1.00897 * 110.99542 * 178.17593 * 3 2 1 23 23 H 1.09001 * 109.47392 * 60.00807 * 4 3 2 24 24 H 1.09001 * 109.47520 * 300.00529 * 4 3 2 25 25 H 1.09001 * 109.47002 * 299.99782 * 5 4 3 26 26 H 1.08993 * 109.46955 * 60.00219 * 5 4 3 27 27 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 28 28 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 29 29 H 0.96999 * 119.99682 * 180.02562 * 10 9 7 30 30 H 1.08991 * 110.32384 * 237.89398 * 15 2 1 31 31 H 1.09004 * 110.32326 * 0.10436 * 15 2 1 32 32 H 1.09003 * 110.41145 * 142.63502 * 16 15 2 33 33 H 1.08996 * 110.41307 * 265.07564 * 16 15 2 34 34 H 1.00900 * 111.00338 * 200.96014 * 17 16 15 35 35 H 1.08998 * 110.40892 * 280.70759 * 18 17 16 36 36 H 1.08986 * 110.41218 * 158.26014 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0393 1.3779 0.0000 4 6 1.5377 2.1245 -1.1615 5 6 2.0888 3.5514 -1.1273 6 6 1.5660 4.3292 -2.3366 7 6 2.1082 5.7348 -2.3026 8 1 2.7609 6.0425 -1.4991 9 6 1.7720 6.6278 -3.2980 10 7 2.2457 7.8543 -3.2685 11 14 0.6436 6.0953 -4.6882 12 1 -0.7672 6.3657 -4.3118 13 1 0.9819 6.8548 -5.9187 14 1 0.8192 4.6423 -4.9393 15 6 2.0658 -0.7692 1.2252 16 6 2.8828 -1.9400 0.6378 17 7 3.2721 -1.4806 -0.7204 18 6 2.0684 -0.7707 -1.2245 19 1 -0.3633 0.5246 -0.8836 20 1 -0.3633 -1.0276 -0.0124 21 1 -0.3634 0.5029 0.8962 22 1 3.0478 1.3906 0.0300 23 1 0.4486 2.1545 -1.1314 24 1 1.8624 1.6318 -2.0780 25 1 1.7644 4.0443 -0.2108 26 1 3.1779 3.5211 -1.1576 27 1 1.8900 3.8364 -3.2533 28 1 0.4768 4.3595 -2.3059 29 1 2.0088 8.4826 -3.9686 30 1 2.7067 -0.1244 1.8264 31 1 1.2388 -1.1483 1.8255 32 1 3.7690 -2.1272 1.2443 33 1 2.2684 -2.8379 0.5737 34 1 3.5055 -2.2627 -1.3136 35 1 1.3264 -1.4857 -1.5799 36 1 2.3413 -0.0775 -2.0200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230741924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:22 Heat of formation + Delta-G solvation = -33.050972 kcal Electronic energy + Delta-G solvation = -14309.386086 eV Core-core repulsion = 12019.639962 eV Total energy + Delta-G solvation = -2289.746123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42877 -36.90216 -35.16269 -33.50213 -31.26852 -29.98678 -28.18786 -26.33594 -24.13243 -22.49814 -21.65287 -20.10277 -18.89250 -17.49833 -16.88457 -16.51152 -16.30797 -15.28747 -15.19858 -14.77581 -14.50320 -14.19745 -13.83454 -13.39440 -13.10527 -12.94949 -12.81417 -12.53845 -12.48346 -12.34286 -12.09749 -11.79734 -11.60298 -11.39389 -11.31205 -11.23104 -10.76118 -9.57653 -9.28740 -8.29188 -6.33551 1.35685 1.37972 1.50190 2.36741 3.05953 3.19023 3.32617 3.72223 3.81613 4.13678 4.22977 4.29362 4.35391 4.44381 4.58527 4.63811 4.72437 4.77382 4.85820 4.89895 4.96540 5.03423 5.11838 5.16479 5.28420 5.30160 5.52695 5.61641 5.66471 5.70862 6.21974 6.31215 6.37202 6.50460 6.74710 7.30965 8.88045 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054494 B = 0.005669 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.691304 B = 4938.161539 C = 5024.381480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.105 3.895 3 N -0.677 5.677 4 C 0.066 3.934 5 C -0.090 4.090 6 C -0.009 4.009 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.001 3.999 10 N -0.953 5.953 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.246 1.246 15 C -0.114 4.114 16 C 0.036 3.964 17 N -0.678 5.678 18 C 0.004 3.996 19 H 0.051 0.949 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.342 0.658 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.266 0.734 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.344 0.656 35 H 0.055 0.945 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -22.838 5.329 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 N -0.307 5.307 4 C -0.062 4.062 5 C -0.128 4.128 6 C -0.047 4.047 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.195 4.195 10 N -0.594 5.594 11 Si 0.778 3.222 12 H -0.189 1.189 13 H -0.209 1.209 14 H -0.170 1.170 15 C -0.152 4.152 16 C -0.093 4.093 17 N -0.308 5.308 18 C -0.127 4.127 19 H 0.070 0.930 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.161 0.839 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.569 -21.860 5.875 22.915 hybrid contribution -0.181 -0.478 -1.531 1.614 sum -3.750 -22.338 4.343 23.063 Atomic orbital electron populations 1.21897 0.92819 1.02343 1.02395 1.21788 0.95500 0.87385 0.94056 1.60727 1.14859 1.12746 1.42396 1.21960 1.00118 0.92845 0.91322 1.21257 0.99166 0.94292 0.98110 1.19476 0.96160 0.93613 0.95406 1.21528 1.29494 0.96959 1.09293 0.95360 1.26081 0.97741 0.94592 1.01072 1.70082 1.47228 1.06302 1.35815 0.85591 0.79070 0.79716 0.77856 1.18949 1.20885 1.16972 1.22444 0.99975 0.96235 0.96539 1.22978 0.99322 0.96424 0.90548 1.63653 1.33747 1.28919 1.04447 1.23697 0.92346 0.98248 0.98435 0.92958 0.90634 0.91901 0.83950 0.90787 0.95214 0.93347 0.93933 0.96341 0.96200 0.92478 0.91065 0.89430 0.89573 0.92746 0.83994 0.92724 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 7.95 71.98 0.57 -2.18 16 2 C 0.10 2.31 0.94 4.42 0.00 2.31 16 3 N -0.68 -19.02 6.05 -465.74 -2.82 -21.83 16 4 C 0.07 2.14 5.01 86.31 0.43 2.57 16 5 C -0.09 -3.71 5.41 30.60 0.17 -3.54 16 6 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 7 C -0.53 -32.12 9.66 25.60 0.25 -31.87 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C 0.00 0.09 5.47 84.66 0.46 0.55 16 10 N -0.95 -61.43 13.96 21.45 0.30 -61.14 16 11 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 15 C -0.11 -2.10 6.39 31.49 0.20 -1.89 16 16 C 0.04 0.58 7.47 86.45 0.65 1.22 16 17 N -0.68 -13.08 7.62 -500.87 -3.82 -16.90 16 18 C 0.00 0.08 6.50 86.45 0.56 0.65 16 19 H 0.05 1.14 6.41 -2.39 -0.02 1.13 16 20 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 22 H 0.34 9.95 8.72 -89.70 -0.78 9.17 16 23 H 0.07 2.32 6.32 -2.39 -0.02 2.31 16 24 H 0.03 0.94 6.21 -2.39 -0.01 0.93 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 28 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 29 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.07 1.48 7.94 -2.39 -0.02 1.46 16 31 H 0.09 1.34 7.71 -2.38 -0.02 1.32 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.34 5.38 8.92 -89.69 -0.80 4.58 16 35 H 0.05 1.00 7.85 -2.39 -0.02 0.98 16 36 H 0.07 1.67 6.02 -2.39 -0.01 1.66 16 Total: -1.00 -66.89 280.71 -1.62 -68.51 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -0.58 Total: 16.80 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 3.41 Total: -32.47 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -6.34 Total: -99.87 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -66.89 -1.62 -68.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230741924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.456 kcal (2) G-P(sol) polarization free energy of solvation -66.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds