Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46901 * 110.28743 * 2 1 4 4 C 1.46907 * 111.00064 * 57.86870 * 3 2 1 5 5 C 1.52996 * 109.47007 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46929 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 C 1.54259 * 110.33029 * 237.87201 * 2 1 3 16 16 C 1.54375 * 105.05815 * 241.00308 * 15 2 1 17 17 N 1.48560 * 104.59914 * 23.85093 * 16 15 2 18 18 C 1.48562 * 104.21684 * 320.51373 * 17 16 15 19 19 H 1.08998 * 109.47571 * 60.70551 * 1 2 3 20 20 H 1.09008 * 109.47353 * 180.70178 * 1 2 3 21 21 H 1.08999 * 109.47625 * 300.70030 * 1 2 3 22 22 H 1.00902 * 111.00171 * 181.82489 * 3 2 1 23 23 H 1.09000 * 109.46801 * 60.00152 * 4 3 2 24 24 H 1.09002 * 109.46963 * 300.00066 * 4 3 2 25 25 H 1.09000 * 109.47441 * 60.00268 * 5 4 3 26 26 H 1.09002 * 109.47087 * 299.99714 * 5 4 3 27 27 H 1.09001 * 109.47671 * 60.00109 * 6 5 4 28 28 H 1.09006 * 109.47297 * 299.99829 * 6 5 4 29 29 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 30 30 H 1.09003 * 110.31736 * 359.89863 * 15 2 1 31 31 H 1.08994 * 110.32544 * 122.10202 * 15 2 1 32 32 H 1.09003 * 110.41041 * 142.63068 * 16 15 2 33 33 H 1.08997 * 110.41266 * 265.06837 * 16 15 2 34 34 H 1.00903 * 110.99909 * 200.96083 * 17 16 15 35 35 H 1.08994 * 110.41512 * 280.70261 * 18 17 16 36 36 H 1.09008 * 110.40795 * 158.26109 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0393 1.3779 0.0000 4 6 1.5376 2.1246 1.1614 5 6 2.0878 3.5518 1.1265 6 6 1.5658 4.3293 2.3364 7 6 2.1082 5.7350 2.3024 8 1 2.7604 6.0428 1.4984 9 6 1.7719 6.6279 3.2976 10 7 0.9782 6.2529 4.2769 11 14 2.4448 8.3700 3.2558 12 1 1.9372 9.1251 4.4294 13 1 3.9287 8.3287 3.2973 14 1 2.0030 9.0415 2.0070 15 6 2.0659 -0.7693 -1.2250 16 6 2.8828 -1.9399 -0.6374 17 7 2.3184 -2.1457 0.7213 18 6 2.0683 -0.7705 1.2246 19 1 -0.3634 0.5028 -0.8962 20 1 -0.3634 -1.0276 0.0126 21 1 -0.3634 0.5246 0.8836 22 1 3.0477 1.3906 -0.0300 23 1 1.8623 1.6320 2.0779 24 1 0.4484 2.1546 1.1312 25 1 1.7627 4.0442 0.2100 26 1 3.1770 3.5222 1.1564 27 1 1.8912 3.8369 3.2528 28 1 0.4766 4.3590 2.3069 29 1 0.6291 5.3482 4.2988 30 1 1.2388 -1.1484 -1.8253 31 1 2.7067 -0.1245 -1.8263 32 1 2.7520 -2.8366 -1.2433 33 1 3.9378 -1.6734 -0.5744 34 1 2.9723 -2.6345 1.3142 35 1 2.9958 -0.3209 1.5791 36 1 1.3241 -0.7867 2.0209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230741928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = -18.525361 kcal Electronic energy + Delta-G solvation = -14263.773344 eV Core-core repulsion = 11974.657098 eV Total energy + Delta-G solvation = -2289.116246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49272 -35.63287 -33.69584 -31.63446 -29.64748 -29.02168 -26.23411 -24.94034 -22.66083 -21.63107 -20.28653 -19.18588 -16.89288 -16.65463 -15.65375 -15.18591 -14.10897 -13.89904 -13.78977 -13.68251 -13.46312 -12.80106 -12.32834 -11.98398 -11.86059 -11.79336 -11.59427 -11.38088 -10.99881 -10.75982 -10.61760 -10.47932 -10.10668 -9.80907 -9.69011 -8.82739 -8.50576 -8.29817 -8.22685 -6.33237 -4.01737 3.45599 3.47912 3.66556 3.99991 4.40682 4.56334 4.59805 4.63493 4.92497 5.08537 5.25465 5.44041 5.46126 5.59947 5.64881 5.74008 5.75947 5.79316 5.89562 5.93706 6.11327 6.20054 6.30197 6.44645 6.59851 6.71139 6.99048 7.05567 7.30018 7.45427 7.53468 7.61021 8.26290 8.49935 8.92056 9.70571 11.07436 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067036 B = 0.005080 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.586479 B = 5510.605744 C = 5572.356387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 N -0.677 5.677 4 C 0.055 3.945 5 C -0.100 4.100 6 C 0.009 3.991 7 C -0.600 4.600 8 H 0.048 0.952 9 C 0.013 3.987 10 N -0.914 5.914 11 Si 1.069 2.931 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.288 1.288 15 C -0.115 4.115 16 C 0.032 3.968 17 N -0.663 5.663 18 C 0.007 3.993 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.336 0.664 23 H 0.024 0.976 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.004 0.996 28 H 0.007 0.993 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.334 0.666 35 H 0.039 0.961 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -15.154 -8.686 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.018 3.982 3 N -0.307 5.307 4 C -0.074 4.074 5 C -0.138 4.138 6 C -0.028 4.028 7 C -0.639 4.639 8 H 0.066 0.934 9 C -0.190 4.190 10 N -0.551 5.551 11 Si 0.897 3.103 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.214 1.214 15 C -0.154 4.154 16 C -0.098 4.098 17 N -0.292 5.292 18 C -0.124 4.124 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.154 0.846 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.148 0.852 35 H 0.058 0.942 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.539 -13.643 -8.499 16.147 hybrid contribution 1.572 -1.558 0.165 2.220 sum 3.111 -15.201 -8.334 17.613 Atomic orbital electron populations 1.21826 0.92956 1.01653 1.02494 1.21660 0.96099 0.87618 0.92819 1.60758 1.14067 1.11632 1.44287 1.22193 1.00438 0.95035 0.89687 1.21489 0.99198 0.92362 1.00753 1.19191 0.95801 0.95451 0.92392 1.22064 1.32769 0.97066 1.11967 0.93367 1.25862 0.95422 1.04978 0.92761 1.70785 1.30886 1.21254 1.32170 0.83546 0.75776 0.74895 0.76048 1.20781 1.21505 1.21427 1.22426 1.00030 0.95703 0.97194 1.22962 0.96466 0.98955 0.91376 1.63681 1.46188 1.15708 1.03585 1.23781 1.00042 0.89522 0.99084 0.91933 0.91947 0.92356 0.84604 0.95795 0.91042 0.92395 0.93658 0.97794 0.97476 0.92183 0.90539 0.90419 0.90221 0.94354 0.85151 0.94221 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 7.95 37.15 0.30 -1.38 16 2 C 0.11 1.40 0.94 -130.22 -0.12 1.28 16 3 N -0.68 -9.98 6.01 -98.57 -0.59 -10.57 16 4 C 0.05 0.96 5.04 -3.82 -0.02 0.94 16 5 C -0.10 -2.13 5.41 -26.73 -0.14 -2.27 16 6 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 7 C -0.60 -17.59 9.11 -34.44 -0.31 -17.91 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 9 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 10 N -0.91 -28.61 13.65 55.43 0.76 -27.85 16 11 Si 1.07 25.77 29.90 -169.99 -5.08 20.68 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 15 C -0.12 -1.25 6.39 -25.35 -0.16 -1.41 16 16 C 0.03 0.31 7.47 -2.18 -0.02 0.29 16 17 N -0.66 -7.15 7.62 -109.66 -0.84 -7.99 16 18 C 0.01 0.09 5.52 -2.18 -0.01 0.08 16 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 21 H 0.06 0.79 6.41 -51.93 -0.33 0.46 16 22 H 0.34 4.71 8.66 -39.29 -0.34 4.37 16 23 H 0.02 0.42 7.21 -51.93 -0.37 0.04 16 24 H 0.07 1.28 6.32 -51.93 -0.33 0.95 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 28 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 29 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 30 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 31 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.33 3.07 8.92 -39.29 -0.35 2.72 16 35 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.08 1.06 7.86 -51.92 -0.41 0.65 16 LS Contribution 284.85 15.07 4.29 4.29 Total: -1.00 -30.96 284.85 -8.40 -39.36 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.22 Total: 2.04 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -0.71 Total: -19.97 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.67 Total: -46.41 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.96 -8.40 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230741928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.834 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds