Wall clock time and date at job start Mon Mar 30 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46901 * 110.28743 * 2 1 4 4 C 1.46907 * 111.00064 * 57.86870 * 3 2 1 5 5 C 1.52996 * 109.47007 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46929 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 C 1.54259 * 110.33029 * 237.87201 * 2 1 3 16 16 C 1.54375 * 105.05815 * 241.00308 * 15 2 1 17 17 N 1.48560 * 104.59914 * 23.85093 * 16 15 2 18 18 C 1.48562 * 104.21684 * 320.51373 * 17 16 15 19 19 H 1.08998 * 109.47571 * 60.70551 * 1 2 3 20 20 H 1.09008 * 109.47353 * 180.70178 * 1 2 3 21 21 H 1.08999 * 109.47625 * 300.70030 * 1 2 3 22 22 H 1.00902 * 111.00171 * 181.82489 * 3 2 1 23 23 H 1.09000 * 109.46801 * 60.00152 * 4 3 2 24 24 H 1.09002 * 109.46963 * 300.00066 * 4 3 2 25 25 H 1.09000 * 109.47441 * 60.00268 * 5 4 3 26 26 H 1.09002 * 109.47087 * 299.99714 * 5 4 3 27 27 H 1.09001 * 109.47671 * 60.00109 * 6 5 4 28 28 H 1.09006 * 109.47297 * 299.99829 * 6 5 4 29 29 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 30 30 H 1.09003 * 110.31736 * 359.89863 * 15 2 1 31 31 H 1.08994 * 110.32544 * 122.10202 * 15 2 1 32 32 H 1.09003 * 110.41041 * 142.63068 * 16 15 2 33 33 H 1.08997 * 110.41266 * 265.06837 * 16 15 2 34 34 H 1.00903 * 110.99909 * 200.96083 * 17 16 15 35 35 H 1.08994 * 110.41512 * 280.70261 * 18 17 16 36 36 H 1.09008 * 110.40795 * 158.26109 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0393 1.3779 0.0000 4 6 1.5376 2.1246 1.1614 5 6 2.0878 3.5518 1.1265 6 6 1.5658 4.3293 2.3364 7 6 2.1082 5.7350 2.3024 8 1 2.7604 6.0428 1.4984 9 6 1.7719 6.6279 3.2976 10 7 0.9782 6.2529 4.2769 11 14 2.4448 8.3700 3.2558 12 1 1.9372 9.1251 4.4294 13 1 3.9287 8.3287 3.2973 14 1 2.0030 9.0415 2.0070 15 6 2.0659 -0.7693 -1.2250 16 6 2.8828 -1.9399 -0.6374 17 7 2.3184 -2.1457 0.7213 18 6 2.0683 -0.7705 1.2246 19 1 -0.3634 0.5028 -0.8962 20 1 -0.3634 -1.0276 0.0126 21 1 -0.3634 0.5246 0.8836 22 1 3.0477 1.3906 -0.0300 23 1 1.8623 1.6320 2.0779 24 1 0.4484 2.1546 1.1312 25 1 1.7627 4.0442 0.2100 26 1 3.1770 3.5222 1.1564 27 1 1.8912 3.8369 3.2528 28 1 0.4766 4.3590 2.3069 29 1 0.6291 5.3482 4.2988 30 1 1.2388 -1.1484 -1.8253 31 1 2.7067 -0.1245 -1.8263 32 1 2.7520 -2.8366 -1.2433 33 1 3.9378 -1.6734 -0.5744 34 1 2.9723 -2.6345 1.3142 35 1 2.9958 -0.3209 1.5791 36 1 1.3241 -0.7867 2.0209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230741928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:24 Heat of formation + Delta-G solvation = -41.307004 kcal Electronic energy + Delta-G solvation = -14264.761230 eV Core-core repulsion = 11974.657098 eV Total energy + Delta-G solvation = -2290.104132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49871 -37.12075 -35.51266 -33.26800 -30.89216 -30.09018 -27.76256 -26.35506 -24.46377 -22.79290 -21.83838 -20.24390 -18.90435 -17.81880 -16.81632 -16.37638 -15.66757 -15.52544 -15.14533 -14.86393 -14.82187 -14.47467 -13.60425 -13.54056 -13.18610 -12.94415 -12.75931 -12.60959 -12.48806 -12.23997 -12.05479 -11.93204 -11.72685 -11.63622 -11.44827 -10.66873 -10.55533 -9.68257 -9.43708 -8.70701 -6.41093 1.52021 1.60866 1.80413 2.56251 2.96967 3.14472 3.45664 3.62602 3.65810 3.98590 4.11809 4.23552 4.24648 4.40790 4.53066 4.54996 4.68938 4.74743 4.78593 4.81557 4.90636 4.97567 5.04446 5.06210 5.18599 5.26548 5.40336 5.50966 5.59950 5.96497 6.09029 6.16892 6.29396 6.39855 6.56476 7.41318 8.70144 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067036 B = 0.005080 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.586479 B = 5510.605744 C = 5572.356387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.106 3.894 3 N -0.675 5.675 4 C 0.071 3.929 5 C -0.086 4.086 6 C 0.009 3.991 7 C -0.621 4.621 8 H 0.050 0.950 9 C -0.040 4.040 10 N -0.938 5.938 11 Si 1.119 2.881 12 H -0.282 1.282 13 H -0.268 1.268 14 H -0.268 1.268 15 C -0.112 4.112 16 C 0.035 3.965 17 N -0.666 5.666 18 C 0.010 3.990 19 H 0.060 0.940 20 H 0.072 0.928 21 H 0.043 0.957 22 H 0.342 0.658 23 H 0.022 0.978 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.048 0.952 27 H -0.013 1.013 28 H -0.012 1.012 29 H 0.254 0.746 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.344 0.656 35 H 0.034 0.966 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -15.600 -9.914 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.014 3.986 3 N -0.306 5.306 4 C -0.058 4.058 5 C -0.124 4.124 6 C -0.028 4.028 7 C -0.658 4.658 8 H 0.069 0.931 9 C -0.237 4.237 10 N -0.575 5.575 11 Si 0.940 3.060 12 H -0.208 1.208 13 H -0.193 1.193 14 H -0.194 1.194 15 C -0.150 4.150 16 C -0.095 4.095 17 N -0.296 5.296 18 C -0.121 4.121 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.062 0.938 22 H 0.161 0.839 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.160 0.840 35 H 0.052 0.948 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.554 -14.130 -9.748 17.356 hybrid contribution 1.243 -1.488 0.532 2.010 sum 3.797 -15.618 -9.216 18.528 Atomic orbital electron populations 1.21809 0.93101 1.02086 1.01719 1.21770 0.96042 0.86565 0.94233 1.60693 1.14538 1.12933 1.42485 1.21854 0.99880 0.93181 0.90888 1.21263 0.99239 0.94000 0.97913 1.19141 0.94571 0.95181 0.93924 1.22515 1.32750 0.98537 1.12033 0.93133 1.27506 0.94838 1.09322 0.92075 1.70924 1.32480 1.20652 1.33479 0.82920 0.76323 0.69998 0.76790 1.20783 1.19307 1.19360 1.22418 1.00455 0.95853 0.96299 1.23010 0.96584 0.99154 0.90713 1.63667 1.47031 1.14582 1.04310 1.23651 0.99422 0.90501 0.98560 0.92060 0.90886 0.93766 0.83926 0.95979 0.91639 0.92921 0.93273 0.99481 0.99371 0.93645 0.89864 0.90122 0.88612 0.93567 0.84037 0.94790 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 7.95 71.98 0.57 -2.60 16 2 C 0.11 2.53 0.94 4.42 0.00 2.54 16 3 N -0.68 -19.11 6.01 -465.76 -2.80 -21.91 16 4 C 0.07 2.47 5.04 86.30 0.43 2.90 16 5 C -0.09 -3.66 5.41 30.59 0.17 -3.50 16 6 C 0.01 0.51 4.28 29.85 0.13 0.63 16 7 C -0.62 -36.57 9.11 25.60 0.23 -36.34 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 10 N -0.94 -59.56 13.65 21.45 0.29 -59.27 16 11 Si 1.12 51.05 29.90 68.60 2.05 53.11 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 C -0.11 -2.16 6.39 31.49 0.20 -1.96 16 16 C 0.03 0.58 7.47 86.45 0.65 1.22 16 17 N -0.67 -12.98 7.62 -500.85 -3.82 -16.80 16 18 C 0.01 0.24 5.52 86.45 0.48 0.72 16 19 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 20 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.04 1.19 6.41 -2.39 -0.02 1.18 16 22 H 0.34 9.05 8.66 -89.69 -0.78 8.28 16 23 H 0.02 0.77 7.21 -2.39 -0.02 0.76 16 24 H 0.07 2.37 6.32 -2.39 -0.02 2.35 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H -0.01 -0.74 8.01 -2.39 -0.02 -0.76 16 28 H -0.01 -0.69 8.01 -2.38 -0.02 -0.70 16 29 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 30 H 0.08 1.51 7.71 -2.39 -0.02 1.49 16 31 H 0.08 1.52 7.94 -2.39 -0.02 1.51 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.34 5.61 8.92 -89.69 -0.80 4.81 16 35 H 0.03 0.83 7.91 -2.39 -0.02 0.81 16 36 H 0.07 1.80 7.86 -2.38 -0.02 1.79 16 Total: -1.00 -65.74 284.85 -1.37 -67.12 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.43 Total: 16.08 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.32 Total: -38.32 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -6.32 Total: -97.98 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.11 kcal Total: -65.74 -1.37 -67.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230741928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.810 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds