Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 5 5 H 1.09000 * 109.47486 * 300.00335 * 4 2 1 6 6 C 1.53006 * 109.46623 * 60.00164 * 4 2 1 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 10 10 O 1.42898 * 109.47420 * 59.99732 * 9 8 7 11 11 C 1.50697 * 109.47240 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00055 * 119.99871 * 11 9 8 13 13 C 1.37875 * 119.99907 * 299.99506 * 11 9 8 14 14 N 1.31524 * 119.99977 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00236 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47295 * 59.99784 * 15 13 11 17 17 H 1.48503 * 109.47431 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46954 * 300.00216 * 15 13 11 19 19 C 1.52997 * 109.47269 * 180.02562 * 4 2 1 20 20 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 21 21 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 23 23 H 1.09000 * 109.47140 * 240.00393 * 2 1 3 24 24 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 26 26 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 6 4 2 28 28 H 1.09000 * 109.47050 * 59.99904 * 6 4 2 29 29 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 30 30 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 32 32 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 33 33 H 0.96705 * 113.99817 * 60.00298 * 10 9 8 34 34 H 0.96997 * 119.99907 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47140 * 300.00547 * 19 4 2 36 36 H 1.09001 * 109.47230 * 59.99691 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8851 2.4981 8 6 3.5705 -2.8851 2.4975 9 6 4.0805 -1.4427 2.4976 10 8 3.6046 -0.7692 3.6646 11 6 5.5875 -1.4427 2.4964 12 1 6.1268 -0.9748 1.6862 13 6 6.2776 -2.0399 3.5298 14 7 5.6208 -2.6101 4.5164 15 14 8.1456 -2.0393 3.5288 16 1 8.6402 -0.6392 3.5292 17 1 8.6416 -2.7403 4.7404 18 1 8.6401 -2.7386 2.3157 19 6 3.5700 -0.7206 1.2496 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9565 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 0.4400 -2.1637 1.2491 28 1 1.8933 -2.6775 0.3591 29 1 1.6775 -2.3715 3.3883 30 1 1.6776 -3.9130 2.4978 31 1 3.9335 -3.3988 1.6073 32 1 3.9342 -3.3995 3.3871 33 1 3.8902 -1.1728 4.4957 34 1 6.1063 -3.0307 5.2432 35 1 3.9337 -1.2341 0.3595 36 1 3.9330 0.3072 1.2497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231020540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = -90.545792 kcal Electronic energy + Delta-G solvation = -15335.509796 eV Core-core repulsion = 13010.977759 eV Total energy + Delta-G solvation = -2324.532037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.61032 -35.56853 -32.78862 -31.98043 -29.48304 -28.19695 -26.83739 -24.70776 -22.26625 -20.79285 -19.26873 -18.58194 -16.73704 -14.93597 -14.82267 -14.32708 -14.08784 -13.35656 -13.06847 -12.88064 -12.68054 -12.02512 -11.83167 -11.73283 -11.43217 -11.16737 -10.99704 -10.80712 -10.57506 -10.50048 -10.31644 -10.13846 -9.94861 -9.79335 -9.47223 -9.35192 -8.69891 -8.46164 -7.83274 -6.07731 -4.18885 3.28033 3.32653 3.35925 4.37111 5.15595 5.21582 5.33321 5.36252 5.70289 5.88675 5.92745 5.95726 6.11444 6.15444 6.21574 6.29375 6.32312 6.46179 6.52288 6.58479 6.65757 6.66675 6.72477 6.78533 6.95991 7.03563 7.22191 7.28069 7.47547 7.69039 7.82474 8.12581 8.31507 8.83802 9.49550 9.68756 10.94139 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.044516 B = 0.009493 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.839734 B = 2948.910222 C = 3286.089677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.077 4.077 5 H 0.072 0.928 6 C -0.108 4.108 7 C -0.116 4.116 8 C -0.136 4.136 9 C 0.253 3.747 10 O -0.591 6.591 11 C -0.534 4.534 12 H 0.056 0.944 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.089 4.089 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.377 0.623 34 H 0.265 0.735 35 H 0.052 0.948 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 1.957 -5.643 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.095 4.095 5 H 0.090 0.910 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.174 4.174 9 C 0.213 3.787 10 O -0.399 6.399 11 C -0.572 4.572 12 H 0.074 0.926 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.127 4.127 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.226 0.774 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.165 2.250 -5.931 9.569 hybrid contribution 1.382 -0.514 0.413 1.531 sum -5.783 1.736 -5.518 8.179 Atomic orbital electron populations 1.21881 0.96195 1.01380 1.00843 1.21189 0.94887 0.96171 0.99013 1.21867 1.01689 0.96129 1.00659 1.21142 0.96879 0.94922 0.96593 0.90979 1.21588 0.98553 0.96019 0.98404 1.21525 0.98686 0.97718 0.97390 1.22167 0.91785 1.01003 1.02495 1.18543 0.90714 0.86982 0.82417 1.86093 1.77438 1.58831 1.17587 1.21803 0.92381 1.35708 1.07302 0.92558 1.24995 0.98718 0.94195 0.95354 1.69599 1.35572 1.37945 1.10918 0.86596 0.85402 0.78247 0.77365 1.20215 1.21216 1.20292 1.21525 0.92914 1.00240 0.97975 0.93655 0.92661 0.92986 0.91969 0.92105 0.93796 0.92920 0.93440 0.93235 0.92394 0.94435 0.94373 0.89140 0.77386 0.92451 0.92919 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.84 37.16 0.33 -1.60 16 2 C -0.09 -1.44 2.51 -90.62 -0.23 -1.67 16 3 C -0.15 -2.15 8.84 37.16 0.33 -1.82 16 4 C -0.08 -1.43 1.63 -90.62 -0.15 -1.57 16 5 H 0.07 1.47 7.68 -51.93 -0.40 1.07 16 6 C -0.11 -1.93 4.85 -26.73 -0.13 -2.06 16 7 C -0.12 -2.33 5.78 -26.73 -0.15 -2.49 16 8 C -0.14 -3.23 4.69 -26.73 -0.13 -3.36 16 9 C 0.25 6.31 0.66 -91.80 -0.06 6.25 16 10 O -0.59 -15.43 11.61 -35.23 -0.41 -15.84 16 11 C -0.53 -14.61 8.24 -34.44 -0.28 -14.89 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.07 1.84 5.22 -17.82 -0.09 1.75 16 14 N -0.90 -24.37 9.69 55.43 0.54 -23.83 16 15 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.09 -1.93 3.81 -26.75 -0.10 -2.03 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 33 H 0.38 10.12 7.15 45.56 0.33 10.44 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.20 6.43 -51.93 -0.33 0.87 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -26.94 270.85 -6.95 -33.89 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.47 Total: 9.15 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -0.67 Total: -23.51 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.54 Total: -23.83 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.41 Total: -15.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.94 -6.95 -33.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231020540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.659 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds