Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 5 5 H 1.09000 * 109.47486 * 300.00335 * 4 2 1 6 6 C 1.53006 * 109.46623 * 60.00164 * 4 2 1 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 10 10 O 1.42898 * 109.47420 * 59.99732 * 9 8 7 11 11 C 1.50697 * 109.47240 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00055 * 119.99871 * 11 9 8 13 13 C 1.37875 * 119.99907 * 299.99506 * 11 9 8 14 14 N 1.31524 * 119.99977 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00236 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47295 * 59.99784 * 15 13 11 17 17 H 1.48503 * 109.47431 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46954 * 300.00216 * 15 13 11 19 19 C 1.52997 * 109.47269 * 180.02562 * 4 2 1 20 20 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 21 21 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 23 23 H 1.09000 * 109.47140 * 240.00393 * 2 1 3 24 24 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 26 26 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 6 4 2 28 28 H 1.09000 * 109.47050 * 59.99904 * 6 4 2 29 29 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 30 30 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 32 32 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 33 33 H 0.96705 * 113.99817 * 60.00298 * 10 9 8 34 34 H 0.96997 * 119.99907 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47140 * 300.00547 * 19 4 2 36 36 H 1.09001 * 109.47230 * 59.99691 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8851 2.4981 8 6 3.5705 -2.8851 2.4975 9 6 4.0805 -1.4427 2.4976 10 8 3.6046 -0.7692 3.6646 11 6 5.5875 -1.4427 2.4964 12 1 6.1268 -0.9748 1.6862 13 6 6.2776 -2.0399 3.5298 14 7 5.6208 -2.6101 4.5164 15 14 8.1456 -2.0393 3.5288 16 1 8.6402 -0.6392 3.5292 17 1 8.6416 -2.7403 4.7404 18 1 8.6401 -2.7386 2.3157 19 6 3.5700 -0.7206 1.2496 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9565 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 0.4400 -2.1637 1.2491 28 1 1.8933 -2.6775 0.3591 29 1 1.6775 -2.3715 3.3883 30 1 1.6776 -3.9130 2.4978 31 1 3.9335 -3.3988 1.6073 32 1 3.9342 -3.3995 3.3871 33 1 3.8902 -1.1728 4.4957 34 1 6.1063 -3.0307 5.2432 35 1 3.9337 -1.2341 0.3595 36 1 3.9330 0.3072 1.2497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231020540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = -106.097206 kcal Electronic energy + Delta-G solvation = -15336.184156 eV Core-core repulsion = 13010.977759 eV Total energy + Delta-G solvation = -2325.206397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26934 -37.21647 -34.42672 -34.06462 -31.20857 -29.84791 -28.10373 -26.58806 -23.79394 -22.49147 -20.69670 -20.33661 -18.73847 -16.97108 -16.50446 -15.92477 -15.65576 -14.92554 -14.61697 -14.49597 -14.16718 -13.58983 -13.46378 -13.20532 -12.97316 -12.90408 -12.80014 -12.34792 -12.22296 -12.18534 -11.90125 -11.74379 -11.62556 -11.40048 -11.15806 -10.94477 -10.55431 -10.39993 -9.82197 -8.12758 -6.32587 1.39428 1.40233 1.47990 2.39309 3.06442 3.89658 4.01469 4.06036 4.23606 4.45180 4.48223 4.55541 4.70693 4.80713 4.84334 4.88224 4.96340 5.00789 5.04052 5.09064 5.17051 5.20387 5.33635 5.35099 5.45122 5.47520 5.58666 5.63561 5.67235 5.73573 5.92962 6.16055 6.28231 6.74225 7.38837 7.57192 8.86046 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.044516 B = 0.009493 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.839734 B = 2948.910222 C = 3286.089677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.071 4.071 5 H 0.051 0.949 6 C -0.103 4.103 7 C -0.111 4.111 8 C -0.130 4.130 9 C 0.239 3.761 10 O -0.596 6.596 11 C -0.564 4.564 12 H 0.047 0.953 13 C 0.027 3.973 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.273 1.273 19 C -0.085 4.085 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.369 0.631 34 H 0.267 0.733 35 H 0.053 0.947 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 1.938 -6.845 10.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.089 4.089 5 H 0.070 0.930 6 C -0.141 4.141 7 C -0.149 4.149 8 C -0.168 4.168 9 C 0.200 3.800 10 O -0.404 6.404 11 C -0.603 4.603 12 H 0.065 0.935 13 C -0.172 4.172 14 N -0.553 5.553 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.198 1.198 19 C -0.122 4.122 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.217 0.783 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.102 2.232 -7.139 11.027 hybrid contribution 1.700 -0.503 0.812 1.950 sum -6.402 1.730 -6.327 9.166 Atomic orbital electron populations 1.21842 0.94050 1.02165 1.01813 1.21154 0.96627 0.95928 0.97214 1.21858 1.00635 0.96160 1.01642 1.21057 0.94331 0.95900 0.97615 0.93039 1.21570 1.00254 0.94966 0.97266 1.21465 0.95911 0.99215 0.98285 1.21998 0.94458 0.99663 1.00710 1.18794 0.89964 0.88199 0.83041 1.86094 1.77433 1.59167 1.17675 1.22127 0.94082 1.36465 1.07578 0.93512 1.25673 1.02702 0.93793 0.95050 1.69704 1.36819 1.37735 1.11010 0.85685 0.80619 0.78120 0.77595 1.20217 1.20451 1.19846 1.21453 0.95499 0.98996 0.96266 0.91559 0.91966 0.93215 0.91307 0.93777 0.91266 0.93484 0.90542 0.92369 0.93640 0.92501 0.94977 0.91957 0.78264 0.92326 0.92786 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.84 71.98 0.64 -2.61 16 2 C -0.09 -2.56 2.51 -10.79 -0.03 -2.59 16 3 C -0.15 -4.03 8.84 71.98 0.64 -3.39 16 4 C -0.07 -2.53 1.63 -10.79 -0.02 -2.55 16 5 H 0.05 2.06 7.68 -2.39 -0.02 2.04 16 6 C -0.10 -3.45 4.85 30.60 0.15 -3.30 16 7 C -0.11 -4.37 5.78 30.59 0.18 -4.20 16 8 C -0.13 -6.21 4.69 30.59 0.14 -6.07 16 9 C 0.24 12.13 0.66 -11.56 -0.01 12.13 16 10 O -0.60 -31.88 11.61 -148.98 -1.73 -33.61 16 11 C -0.56 -31.50 8.24 25.60 0.21 -31.29 16 12 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 13 C 0.03 1.49 5.22 84.65 0.44 1.93 16 14 N -0.91 -50.12 9.69 21.45 0.21 -49.91 16 15 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 C -0.08 -3.68 3.81 30.58 0.12 -3.56 16 20 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.06 1.34 6.43 -2.39 -0.02 1.33 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.04 1.34 6.43 -2.39 -0.02 1.33 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 2.15 6.43 -2.39 -0.02 2.14 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.89 7.68 -2.39 -0.02 1.87 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 33 H 0.37 20.47 7.15 -74.05 -0.53 19.94 16 34 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.92 6.43 -2.39 -0.02 1.90 16 Total: -1.00 -57.58 270.85 3.47 -54.11 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.51 Total: 29.44 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 2.46 Total: -45.50 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.21 Total: -49.91 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.73 Total: -33.61 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -57.58 3.47 -54.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231020540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.988 kcal (2) G-P(sol) polarization free energy of solvation -57.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds