Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46769 * 180.02562 * 4 3 2 6 6 C 1.47439 * 110.99961 * 69.87863 * 5 4 3 7 7 C 1.54322 * 107.23490 * 123.25626 * 6 5 4 8 8 C 1.55135 * 103.02006 * 22.28319 * 7 6 5 9 9 H 1.09001 * 110.98947 * 82.47394 * 8 7 6 10 10 N 1.46495 * 110.98923 * 206.25812 * 8 7 6 11 11 C 1.36937 * 119.99910 * 273.53936 * 10 8 7 12 12 H 1.08002 * 120.00269 * 0.02562 * 11 10 8 13 13 C 1.38810 * 119.99989 * 180.02562 * 11 10 8 14 14 N 1.31622 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47517 * 89.99973 * 15 13 11 17 17 H 1.48501 * 109.46891 * 210.00218 * 15 13 11 18 18 H 1.48499 * 109.47102 * 329.99422 * 15 13 11 19 19 C 1.47853 * 110.99956 * 190.71917 * 5 4 3 20 20 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 21 21 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 23 23 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 24 24 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 25 25 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 26 26 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 28 28 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 29 29 H 1.09003 * 109.89080 * 242.65955 * 6 5 4 30 30 H 1.09003 * 109.89174 * 3.69037 * 6 5 4 31 31 H 1.09003 * 110.70500 * 140.67082 * 7 6 5 32 32 H 1.09004 * 110.70538 * 263.72555 * 7 6 5 33 33 H 0.97002 * 120.00170 * 93.54588 * 10 8 7 34 34 H 0.97006 * 119.99748 * 179.97438 * 14 13 11 35 35 H 1.09002 * 110.36766 * 332.46788 * 19 5 4 36 36 H 1.08997 * 110.37443 * 94.80755 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.7897 3.4827 1.2929 7 6 5.1427 3.9784 1.8455 8 6 6.0239 4.0799 0.5728 9 1 5.8462 5.0190 0.0487 10 7 7.4429 3.9270 0.9035 11 6 8.1785 5.0174 1.2842 12 1 7.7126 5.9901 1.3411 13 6 9.5231 4.8727 1.5970 14 7 10.0912 3.6874 1.5272 15 14 10.5265 6.3601 2.1171 16 1 10.4554 6.5139 3.5923 17 1 11.9411 6.1709 1.7068 18 1 9.9808 7.5777 1.4655 19 6 5.5147 2.8753 -0.2573 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 3.9337 0.9285 0.8891 28 1 3.9329 0.9289 -0.8909 29 1 3.1168 4.3278 1.1472 30 1 3.3433 2.7684 1.9847 31 1 5.0320 4.9551 2.3167 32 1 5.5590 3.2575 2.5492 33 1 7.8613 3.0534 0.8526 34 1 11.0309 3.5864 1.7455 35 1 5.9900 1.9540 0.0797 36 1 5.7074 3.0366 -1.3179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258663095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -2.530043 kcal Electronic energy + Delta-G solvation = -14164.961469 eV Core-core repulsion = 11876.538833 eV Total energy + Delta-G solvation = -2288.422636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.72931 -35.55657 -33.89309 -31.56257 -29.77994 -28.37345 -26.70635 -23.51497 -22.97330 -21.26469 -20.26247 -19.56646 -17.22240 -15.91922 -15.52734 -14.98727 -14.34383 -14.09085 -13.39886 -13.15402 -13.09101 -12.88416 -12.60509 -12.11272 -11.81543 -11.37804 -11.16750 -11.04823 -10.96194 -10.80845 -10.60687 -10.53934 -10.49980 -10.17738 -9.87746 -9.68137 -8.89310 -8.00240 -6.96820 -5.77655 -3.06852 3.43630 3.48740 3.50543 4.20236 4.61126 4.85671 4.94203 5.06058 5.24528 5.27548 5.41805 5.53658 5.58798 5.66807 5.72361 5.76156 5.80843 5.88734 5.91872 5.96031 6.04651 6.14899 6.24289 6.31923 6.34198 6.44704 6.57830 6.79755 7.03744 7.31924 7.42950 7.70847 8.40966 9.51845 10.08884 10.43561 11.45080 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.085745 B = 0.005149 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.473093 B = 5436.971571 C = 5579.748917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.114 4.114 4 C 0.051 3.949 5 N -0.530 5.530 6 C 0.043 3.957 7 C -0.163 4.163 8 C 0.174 3.826 9 H 0.061 0.939 10 N -0.719 5.719 11 C -0.239 4.239 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.908 3.092 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.036 3.964 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.045 0.955 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 -5.356 -2.393 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.078 4.078 5 N -0.255 5.255 6 C -0.085 4.085 7 C -0.205 4.205 8 C 0.062 3.938 9 H 0.079 0.921 10 N -0.359 5.359 11 C -0.370 4.370 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.739 3.261 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.092 4.092 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.968 -4.926 -2.765 16.938 hybrid contribution 1.163 -0.003 1.048 1.566 sum -14.805 -4.929 -1.716 15.698 Atomic orbital electron populations 1.21756 0.95966 1.01299 1.01791 1.21508 0.95746 0.97138 1.01899 1.21595 0.94917 0.96112 1.02555 1.22276 0.95220 0.89782 1.00518 1.63562 1.15168 1.15452 1.31271 1.22791 0.98058 0.98289 0.89336 1.23485 0.95098 1.01105 1.00794 1.21283 0.85206 0.95604 0.91677 0.92071 1.42322 1.03885 1.09101 1.80638 1.19252 0.91515 0.88759 1.37490 0.91073 1.24756 0.96916 0.96772 1.02506 1.69668 1.11862 1.21380 1.55310 0.86172 0.79622 0.82023 0.78284 1.21732 1.21758 1.20682 1.23228 0.86246 0.99006 1.00735 0.92746 0.93006 0.92848 0.92052 0.92251 0.92138 0.91318 0.94988 0.91234 0.91318 0.93594 0.91756 0.91820 0.78240 0.93489 0.93644 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.34 16 3 C -0.11 -1.27 5.24 -26.73 -0.14 -1.41 16 4 C 0.05 0.68 4.54 -3.82 -0.02 0.66 16 5 N -0.53 -8.35 5.16 -231.24 -1.19 -9.54 16 6 C 0.04 0.67 6.21 -2.84 -0.02 0.65 16 7 C -0.16 -3.04 6.64 -24.91 -0.17 -3.20 16 8 C 0.17 3.61 3.68 -65.80 -0.24 3.37 16 9 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 10 N -0.72 -18.42 5.28 -51.36 -0.27 -18.69 16 11 C -0.24 -6.72 9.98 -15.06 -0.15 -6.87 16 12 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 15 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.04 0.65 6.31 -2.29 -0.01 0.63 16 20 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.69 7.14 -51.93 -0.37 0.32 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.44 7.96 -51.93 -0.41 0.03 16 28 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.66 6.91 -51.93 -0.36 0.30 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.38 10.40 7.71 -40.82 -0.31 10.08 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 289.45 15.07 4.36 4.36 Total: -1.00 -29.46 289.45 -8.50 -37.96 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.47 Total: 4.96 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.63 Total: -8.86 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.74 Total: -55.92 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.46 -8.50 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258663095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.430 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds