Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46769 * 180.02562 * 4 3 2 6 6 C 1.47439 * 110.99961 * 69.87863 * 5 4 3 7 7 C 1.54322 * 107.23490 * 123.25626 * 6 5 4 8 8 C 1.55135 * 103.02006 * 22.28319 * 7 6 5 9 9 H 1.09001 * 110.98947 * 82.47394 * 8 7 6 10 10 N 1.46495 * 110.98923 * 206.25812 * 8 7 6 11 11 C 1.36937 * 119.99910 * 273.53936 * 10 8 7 12 12 H 1.08002 * 120.00269 * 0.02562 * 11 10 8 13 13 C 1.38810 * 119.99989 * 180.02562 * 11 10 8 14 14 N 1.31622 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47517 * 89.99973 * 15 13 11 17 17 H 1.48501 * 109.46891 * 210.00218 * 15 13 11 18 18 H 1.48499 * 109.47102 * 329.99422 * 15 13 11 19 19 C 1.47853 * 110.99956 * 190.71917 * 5 4 3 20 20 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 21 21 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 23 23 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 24 24 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 25 25 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 26 26 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 28 28 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 29 29 H 1.09003 * 109.89080 * 242.65955 * 6 5 4 30 30 H 1.09003 * 109.89174 * 3.69037 * 6 5 4 31 31 H 1.09003 * 110.70500 * 140.67082 * 7 6 5 32 32 H 1.09004 * 110.70538 * 263.72555 * 7 6 5 33 33 H 0.97002 * 120.00170 * 93.54588 * 10 8 7 34 34 H 0.97006 * 119.99748 * 179.97438 * 14 13 11 35 35 H 1.09002 * 110.36766 * 332.46788 * 19 5 4 36 36 H 1.08997 * 110.37443 * 94.80755 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.7897 3.4827 1.2929 7 6 5.1427 3.9784 1.8455 8 6 6.0239 4.0799 0.5728 9 1 5.8462 5.0190 0.0487 10 7 7.4429 3.9270 0.9035 11 6 8.1785 5.0174 1.2842 12 1 7.7126 5.9901 1.3411 13 6 9.5231 4.8727 1.5970 14 7 10.0912 3.6874 1.5272 15 14 10.5265 6.3601 2.1171 16 1 10.4554 6.5139 3.5923 17 1 11.9411 6.1709 1.7068 18 1 9.9808 7.5777 1.4655 19 6 5.5147 2.8753 -0.2573 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 3.9337 0.9285 0.8891 28 1 3.9329 0.9289 -0.8909 29 1 3.1168 4.3278 1.1472 30 1 3.3433 2.7684 1.9847 31 1 5.0320 4.9551 2.3167 32 1 5.5590 3.2575 2.5492 33 1 7.8613 3.0534 0.8526 34 1 11.0309 3.5864 1.7455 35 1 5.9900 1.9540 0.0797 36 1 5.7074 3.0366 -1.3179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258663095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = -21.675974 kcal Electronic energy + Delta-G solvation = -14165.791699 eV Core-core repulsion = 11876.538833 eV Total energy + Delta-G solvation = -2289.252866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11155 -36.80698 -35.47695 -33.25954 -31.33197 -29.68305 -28.15176 -25.40680 -24.16061 -22.19051 -21.74124 -20.95258 -19.28455 -17.24393 -16.98166 -16.26965 -15.97175 -15.38153 -14.88407 -14.69253 -14.35765 -14.24148 -13.84295 -13.23298 -13.07956 -12.99897 -12.76940 -12.58041 -12.25212 -12.16236 -12.01321 -11.88442 -11.79232 -11.62135 -11.43110 -11.36704 -10.94359 -9.30177 -9.04571 -7.97035 -5.26802 1.46941 1.48641 1.57317 2.53366 2.97811 3.35472 3.81408 3.83090 3.98801 4.09458 4.25084 4.31853 4.35108 4.39714 4.46706 4.65382 4.66730 4.75351 4.80031 4.94575 4.97910 5.00402 5.07914 5.13354 5.28473 5.31042 5.40946 5.43229 5.50140 5.51835 5.97446 6.18117 6.25446 7.30595 8.04143 8.28444 9.26540 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.085745 B = 0.005149 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.473093 B = 5436.971571 C = 5579.748917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.106 4.106 4 C 0.048 3.952 5 N -0.529 5.529 6 C 0.052 3.948 7 C -0.156 4.156 8 C 0.163 3.837 9 H 0.056 0.944 10 N -0.732 5.732 11 C -0.243 4.243 12 H 0.076 0.924 13 C -0.075 4.075 14 N -0.971 5.971 15 Si 0.975 3.025 16 H -0.287 1.287 17 H -0.295 1.295 18 H -0.268 1.268 19 C 0.047 3.953 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.037 0.963 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 -5.016 -2.433 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.144 4.144 4 C -0.080 4.080 5 N -0.254 5.254 6 C -0.076 4.076 7 C -0.197 4.197 8 C 0.054 3.946 9 H 0.074 0.926 10 N -0.372 5.372 11 C -0.374 4.374 12 H 0.094 0.906 13 C -0.267 4.267 14 N -0.621 5.621 15 Si 0.804 3.196 16 H -0.214 1.214 17 H -0.221 1.221 18 H -0.193 1.193 19 C -0.081 4.081 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.204 0.796 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.620 -4.572 -2.812 18.419 hybrid contribution 1.585 -0.132 1.036 1.898 sum -16.035 -4.704 -1.775 16.805 Atomic orbital electron populations 1.21743 0.94914 1.02023 1.01991 1.21491 0.96632 0.95886 1.02074 1.21530 0.92946 0.97346 1.02530 1.22391 0.96816 0.88256 1.00515 1.63632 1.13242 1.17115 1.31370 1.22770 0.96292 0.99183 0.89315 1.23319 0.96314 1.00839 0.99259 1.21487 0.83276 0.96635 0.93247 0.92636 1.42476 1.05764 1.08000 1.80911 1.19623 0.91972 0.89560 1.36278 0.90600 1.25585 0.98150 0.99524 1.03444 1.69824 1.11842 1.23457 1.57004 0.85116 0.77606 0.79091 0.77810 1.21396 1.22129 1.19314 1.23043 0.87644 0.97186 1.00251 0.92486 0.92075 0.92728 0.91735 0.92291 0.92084 0.91355 0.95458 0.90845 0.89696 0.91997 0.91705 0.93617 0.79557 0.93956 0.94501 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.03 5.93 30.59 0.18 -1.85 16 3 C -0.11 -2.11 5.24 30.59 0.16 -1.95 16 4 C 0.05 1.20 4.54 86.30 0.39 1.59 16 5 N -0.53 -15.74 5.16 -885.51 -4.57 -20.30 16 6 C 0.05 1.51 6.21 86.65 0.54 2.05 16 7 C -0.16 -5.69 6.64 31.77 0.21 -5.48 16 8 C 0.16 6.76 3.68 46.38 0.17 6.93 16 9 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 10 N -0.73 -37.99 5.28 -316.42 -1.67 -39.66 16 11 C -0.24 -13.69 9.98 84.03 0.84 -12.86 16 12 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 13 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 14 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 15 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.05 1.67 6.31 86.77 0.55 2.22 16 20 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.22 7.14 -2.39 -0.02 1.20 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.03 0.71 7.96 -2.39 -0.02 0.69 16 28 H 0.07 1.78 8.07 -2.39 -0.02 1.76 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 1.62 6.91 -2.39 -0.02 1.60 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.37 20.69 7.71 -92.71 -0.71 19.98 16 34 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 35 H 0.04 1.36 7.67 -2.39 -0.02 1.34 16 36 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -62.03 289.45 0.60 -61.43 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.31 Total: 24.39 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.22 Total: -14.60 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.95 Total: -119.70 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -62.03 0.60 -61.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258663095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.752 kcal (2) G-P(sol) polarization free energy of solvation -62.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds