Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 C 1.53003 * 109.46871 * 239.99675 * 2 1 3 5 5 N 1.46900 * 109.46898 * 120.00003 * 2 1 3 6 6 C 1.48562 * 111.00052 * 56.46018 * 5 2 1 7 7 C 1.54383 * 104.69695 * 159.09601 * 6 5 2 8 8 C 1.54261 * 105.06290 * 336.09010 * 7 6 5 9 9 H 1.08995 * 110.32183 * 118.99029 * 8 7 6 10 10 N 1.46498 * 110.32159 * 241.10353 * 8 7 6 11 11 C 1.36937 * 119.99913 * 273.54139 * 10 8 7 12 12 H 1.08001 * 119.99537 * 0.02562 * 11 10 8 13 13 C 1.38813 * 119.99940 * 180.02562 * 11 10 8 14 14 N 1.31614 * 120.00029 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99735 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47279 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47233 * 120.00011 * 15 13 11 18 18 H 1.48501 * 109.47220 * 239.99522 * 15 13 11 19 19 C 1.48853 * 111.13119 * 171.78226 * 5 2 1 20 20 H 1.08993 * 109.47584 * 299.99793 * 1 2 3 21 21 H 1.08995 * 109.47319 * 60.00240 * 1 2 3 22 22 H 1.09001 * 109.47022 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46812 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47064 * 300.00202 * 3 2 1 25 25 H 1.09003 * 109.46835 * 59.99870 * 3 2 1 26 26 H 1.08989 * 109.47440 * 293.12523 * 4 2 1 27 27 H 1.08997 * 109.47076 * 53.13065 * 4 2 1 28 28 H 1.09006 * 109.46806 * 173.12731 * 4 2 1 29 29 H 1.09004 * 110.41265 * 40.26244 * 6 5 2 30 30 H 1.08994 * 110.41005 * 277.93423 * 6 5 2 31 31 H 1.09006 * 110.32077 * 94.98740 * 7 6 5 32 32 H 1.08995 * 110.32554 * 217.18958 * 7 6 5 33 33 H 0.96996 * 120.00021 * 93.54617 * 10 8 7 34 34 H 0.96998 * 120.00415 * 180.02562 * 14 13 11 35 35 H 1.08991 * 110.39385 * 82.21203 * 19 5 2 36 36 H 1.09003 * 110.49346 * 319.84234 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.4746 -2.0723 1.2774 7 6 2.4441 -2.8241 2.2145 8 6 3.7727 -2.0452 2.1253 9 1 4.0483 -1.6536 3.1044 10 7 4.8354 -2.9097 1.6063 11 6 5.5534 -3.7014 2.4624 12 1 5.3358 -3.6887 3.5202 13 6 6.5607 -4.5202 1.9706 14 7 6.8261 -4.5352 0.6816 15 14 7.5395 -5.6006 3.1384 16 1 7.0497 -5.4005 4.5260 17 1 7.3706 -7.0250 2.7540 18 1 8.9769 -5.2350 3.0637 19 6 3.4941 -0.8883 1.1417 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.7806 -1.7782 -1.1899 27 1 1.5797 -0.2834 -2.1349 28 1 3.1231 -0.6161 -1.3129 29 1 1.4659 -2.5340 0.2899 30 1 0.4699 -2.0609 1.6997 31 1 2.0668 -2.8133 3.2371 32 1 2.5827 -3.8496 1.8722 33 1 5.0305 -2.9213 0.6562 34 1 7.5297 -5.1075 0.3379 35 1 4.0103 0.0163 1.4629 36 1 3.8033 -1.1639 0.1335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259289187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = -4.903601 kcal Electronic energy + Delta-G solvation = -14888.437667 eV Core-core repulsion = 12599.912105 eV Total energy + Delta-G solvation = -2288.525562 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72963 -37.12886 -34.91109 -32.44360 -30.21741 -29.00783 -28.28666 -27.59745 -25.31340 -23.13251 -21.07288 -19.67718 -19.14503 -17.31737 -16.78479 -16.27016 -15.52256 -15.15981 -15.01069 -14.77869 -14.67208 -13.65466 -13.38099 -13.08910 -13.05045 -12.89921 -12.75280 -12.55874 -12.45897 -12.26211 -12.09630 -12.03492 -11.85982 -11.62674 -11.51659 -11.28261 -10.95093 -9.31925 -9.02270 -7.95775 -5.24583 1.46960 1.47451 1.57815 2.54556 3.03110 3.37130 3.81254 3.82959 3.99552 4.11453 4.20489 4.28435 4.35882 4.44468 4.65017 4.70716 4.73885 4.78440 4.91986 4.96426 4.99060 5.04332 5.05423 5.09979 5.24894 5.26271 5.38801 5.44886 5.50102 5.53991 5.94682 6.24748 6.27879 7.32214 8.07441 8.31147 9.28073 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058419 B = 0.006970 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.178848 B = 4016.158603 C = 4153.551202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.084 3.916 3 C -0.131 4.131 4 C -0.181 4.181 5 N -0.497 5.497 6 C 0.040 3.960 7 C -0.140 4.140 8 C 0.166 3.834 9 H 0.047 0.953 10 N -0.733 5.733 11 C -0.238 4.238 12 H 0.075 0.925 13 C -0.076 4.076 14 N -0.971 5.971 15 Si 0.973 3.027 16 H -0.266 1.266 17 H -0.293 1.293 18 H -0.293 1.293 19 C 0.034 3.966 20 H 0.064 0.936 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.371 0.629 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.826 9.678 -1.608 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.006 4.006 3 C -0.189 4.189 4 C -0.240 4.240 5 N -0.221 5.221 6 C -0.087 4.087 7 C -0.181 4.181 8 C 0.057 3.943 9 H 0.065 0.935 10 N -0.373 5.373 11 C -0.370 4.370 12 H 0.093 0.907 13 C -0.268 4.268 14 N -0.622 5.622 15 Si 0.802 3.198 16 H -0.191 1.191 17 H -0.221 1.221 18 H -0.220 1.220 19 C -0.095 4.095 20 H 0.083 0.917 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.203 0.797 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.945 9.965 -0.974 16.366 hybrid contribution 1.243 -1.390 -0.640 1.971 sum -11.702 8.575 -1.614 14.598 Atomic orbital electron populations 1.21834 0.92206 1.02161 1.02835 1.21374 0.96561 0.94999 0.87673 1.21783 1.00465 0.94004 1.02648 1.22500 1.01187 1.00755 0.99522 1.65748 1.04158 1.15451 1.36744 1.23059 0.98830 0.88640 0.98215 1.22950 0.96622 0.98926 0.99609 1.21114 0.87771 0.89642 0.95779 0.93525 1.42659 1.39205 1.48619 1.06815 1.19657 1.10643 1.15603 0.91095 0.90731 1.25549 1.01200 1.02553 0.97494 1.69822 1.35155 1.44110 1.13111 0.85076 0.78072 0.78055 0.78594 1.19062 1.22065 1.22021 1.23298 0.89763 0.98034 0.98365 0.91701 0.90647 0.92828 0.93799 0.90649 0.91778 0.93278 0.90341 0.93452 0.94096 0.89052 0.91487 0.93252 0.79703 0.94048 0.90483 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.24 71.98 0.59 -1.99 16 2 C 0.08 2.01 0.71 3.53 0.00 2.01 16 3 C -0.13 -2.83 8.50 71.98 0.61 -2.22 16 4 C -0.18 -4.57 7.59 71.98 0.55 -4.03 16 5 N -0.50 -14.65 5.20 -831.34 -4.32 -18.96 16 6 C 0.04 1.22 5.04 86.45 0.44 1.65 16 7 C -0.14 -5.17 6.78 31.49 0.21 -4.96 16 8 C 0.17 6.91 3.70 45.89 0.17 7.08 16 9 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 10 N -0.73 -37.94 5.09 -318.70 -1.62 -39.56 16 11 C -0.24 -13.46 9.97 84.03 0.84 -12.63 16 12 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 13 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 14 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 15 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 19 C 0.03 1.20 5.17 86.39 0.45 1.64 16 20 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.06 6.87 -2.39 -0.02 1.05 16 23 H 0.04 1.04 7.21 -2.39 -0.02 1.03 16 24 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.35 5.93 -2.39 -0.01 1.34 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.35 6.33 -2.38 -0.02 1.33 16 29 H 0.04 1.27 5.76 -2.38 -0.01 1.26 16 30 H 0.09 2.37 7.66 -2.39 -0.02 2.35 16 31 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 32 H 0.05 2.06 7.95 -2.39 -0.02 2.04 16 33 H 0.37 20.60 7.54 -92.71 -0.70 19.90 16 34 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.08 2.63 7.75 -2.39 -0.02 2.62 16 36 H 0.05 1.69 5.07 -2.39 -0.01 1.67 16 Total: -1.00 -62.35 276.59 1.04 -61.31 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.35 Total: 25.71 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.32 Total: -17.38 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -5.66 Total: -118.38 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -62.35 1.04 -61.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.404 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds