Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47170 * 2 1 4 4 C 1.42895 * 114.00350 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46880 * 29.99836 * 4 3 2 6 6 C 1.52999 * 109.47162 * 270.00457 * 4 3 2 7 7 C 1.53005 * 109.47159 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46812 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.46733 * 299.99162 * 7 6 4 10 10 C 1.52997 * 109.47452 * 59.99536 * 7 6 4 11 11 C 1.53002 * 109.46817 * 300.00239 * 10 7 6 12 12 C 1.52997 * 109.47503 * 149.99960 * 4 3 2 13 13 H 1.09002 * 109.47153 * 60.00043 * 12 4 3 14 14 C 1.50699 * 109.47078 * 300.00250 * 12 4 3 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 12 4 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 12 4 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 H 1.09000 * 109.47058 * 60.00081 * 1 2 3 23 23 H 1.08999 * 109.46946 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47148 * 300.00372 * 1 2 3 25 25 H 1.08994 * 109.47095 * 239.99870 * 2 1 3 26 26 H 1.09000 * 109.47058 * 119.99919 * 2 1 3 27 27 H 1.09000 * 109.47486 * 59.99398 * 6 4 3 28 28 H 1.09002 * 109.46716 * 299.99480 * 6 4 3 29 29 H 1.09004 * 109.46976 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47380 * 300.00211 * 9 7 6 31 31 H 1.09001 * 109.46989 * 60.00699 * 9 7 6 32 32 H 1.08993 * 109.47194 * 179.97438 * 10 7 6 33 33 H 1.09002 * 109.46695 * 59.99734 * 10 7 6 34 34 H 1.08992 * 109.47063 * 299.99823 * 11 10 7 35 35 H 1.09004 * 109.46733 * 179.97438 * 11 10 7 36 36 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9386 1.5006 1.4433 7 6 5.4640 1.6208 1.4439 8 1 5.8257 1.6500 2.4717 9 6 6.0708 0.4152 0.7234 10 6 5.8746 2.9060 0.7225 11 6 5.3667 2.8655 -0.7202 12 6 3.8409 2.7456 -0.7207 13 1 3.4082 3.6043 -0.2072 14 6 3.3408 2.7058 -2.1417 15 1 2.7862 1.8491 -2.4951 16 6 3.5920 3.7626 -2.9909 17 7 4.2677 4.8056 -2.5606 18 14 2.9726 3.7128 -4.7525 19 1 1.6134 4.3076 -4.8163 20 1 3.8932 4.4874 -5.6229 21 1 2.9188 2.3038 -5.2187 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.6465 0.5848 1.9571 28 1 3.5060 2.3592 1.9568 29 1 7.1575 0.5006 0.7242 30 1 5.7782 -0.5004 1.2373 31 1 5.7091 0.3864 -0.3045 32 1 6.9611 2.9919 0.7233 33 1 5.4422 3.7648 1.2359 34 1 5.7991 2.0067 -1.2336 35 1 5.6589 3.7813 -1.2341 36 1 4.4447 5.5489 -3.1582 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259603583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -77.364851 kcal Electronic energy + Delta-G solvation = -15222.046741 eV Core-core repulsion = 12898.086273 eV Total energy + Delta-G solvation = -2323.960468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.75534 -36.13882 -33.15686 -31.07359 -29.93289 -28.43920 -26.63553 -24.18390 -22.44525 -21.19698 -20.48419 -17.78493 -16.32700 -16.11423 -14.88935 -14.72187 -14.19641 -13.59019 -13.12773 -13.03692 -12.94502 -12.20771 -12.09146 -11.64255 -11.52763 -11.31745 -10.96989 -10.84725 -10.74890 -10.59820 -10.31303 -10.10531 -10.04450 -9.68801 -9.44353 -9.15615 -8.66885 -8.34166 -8.16785 -5.88505 -3.92030 3.36725 3.42859 3.46121 4.51522 4.53020 5.40162 5.44665 5.46522 5.50003 5.53874 5.67307 5.83003 5.96467 6.01059 6.15246 6.21139 6.25868 6.26700 6.35164 6.45393 6.50338 6.51849 6.57374 6.72848 6.85565 6.92127 7.07632 7.26114 7.47960 7.84127 7.91016 8.17213 8.37919 8.55796 9.09799 9.70323 11.17537 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.013455 C = 0.009137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.197475 B = 2080.510067 C = 3063.868609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.369 6.369 4 C 0.100 3.900 5 H 0.047 0.953 6 C -0.134 4.134 7 C -0.085 4.085 8 H 0.055 0.945 9 C -0.150 4.150 10 C -0.117 4.117 11 C -0.109 4.109 12 C 0.055 3.945 13 H 0.031 0.969 14 C -0.496 4.496 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -7.695 6.071 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.288 6.288 4 C 0.042 3.958 5 H 0.065 0.935 6 C -0.172 4.172 7 C -0.104 4.104 8 H 0.073 0.927 9 C -0.207 4.207 10 C -0.154 4.154 11 C -0.147 4.147 12 C 0.036 3.964 13 H 0.049 0.951 14 C -0.534 4.534 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.025 -7.362 6.000 9.498 hybrid contribution -0.166 -0.242 -0.899 0.945 sum -0.191 -7.604 5.102 9.159 Atomic orbital electron populations 1.21706 0.94838 1.01071 1.02911 1.22320 0.94831 0.86113 0.98760 1.87994 1.22447 1.23655 1.94745 1.22402 0.79261 1.01017 0.93089 0.93454 1.22079 0.95387 1.00701 0.99004 1.21025 0.94884 0.96148 0.98296 0.92693 1.21943 0.99973 0.97009 1.01774 1.21691 0.98870 0.95842 0.99035 1.21645 0.97477 1.02992 0.92544 1.18735 0.91958 0.90871 0.94811 0.95061 1.21100 1.33409 1.03302 0.95592 0.92803 1.24933 0.95401 0.95554 0.98278 1.69878 1.40711 1.07301 1.35514 0.86650 0.78647 0.77861 0.85142 1.20823 1.21429 1.20113 0.91824 0.92164 0.92377 0.94184 0.94904 0.93709 0.91918 0.93351 0.93885 0.91344 0.93755 0.92832 0.94365 0.88659 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 37.16 0.38 -1.79 16 2 C 0.06 0.99 6.47 37.16 0.24 1.23 16 3 O -0.37 -8.13 9.58 -35.23 -0.34 -8.47 16 4 C 0.10 2.15 1.72 -26.73 -0.05 2.11 16 5 H 0.05 1.02 6.07 -51.93 -0.32 0.70 16 6 C -0.13 -2.48 5.07 -26.73 -0.14 -2.62 16 7 C -0.08 -1.46 3.19 -90.62 -0.29 -1.75 16 8 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.15 -2.37 8.50 37.16 0.32 -2.06 16 10 C -0.12 -2.26 5.45 -26.73 -0.15 -2.40 16 11 C -0.11 -2.53 4.71 -26.70 -0.13 -2.66 16 12 C 0.05 1.39 1.85 -91.75 -0.17 1.22 16 13 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.50 -13.89 8.23 -34.44 -0.28 -14.17 16 15 H 0.05 1.52 7.70 -52.49 -0.40 1.12 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -25.84 11.32 55.43 0.63 -25.22 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 27 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.21 4.81 -51.93 -0.25 0.96 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.87 6.43 -51.93 -0.33 0.54 16 35 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 277.15 15.07 4.18 4.18 Total: -1.00 -28.96 277.15 -7.12 -36.08 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.22 Total: -2.02 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -0.35 Total: -21.35 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.63 Total: -25.22 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.34 Total: -8.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.96 -7.12 -36.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259603583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.284 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds