Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47170 * 2 1 4 4 C 1.42895 * 114.00350 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46880 * 29.99836 * 4 3 2 6 6 C 1.52999 * 109.47162 * 270.00457 * 4 3 2 7 7 C 1.53005 * 109.47159 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46812 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.46733 * 299.99162 * 7 6 4 10 10 C 1.52997 * 109.47452 * 59.99536 * 7 6 4 11 11 C 1.53002 * 109.46817 * 300.00239 * 10 7 6 12 12 C 1.52997 * 109.47503 * 149.99960 * 4 3 2 13 13 H 1.09002 * 109.47153 * 60.00043 * 12 4 3 14 14 C 1.50699 * 109.47078 * 300.00250 * 12 4 3 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 12 4 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 12 4 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 H 1.09000 * 109.47058 * 60.00081 * 1 2 3 23 23 H 1.08999 * 109.46946 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47148 * 300.00372 * 1 2 3 25 25 H 1.08994 * 109.47095 * 239.99870 * 2 1 3 26 26 H 1.09000 * 109.47058 * 119.99919 * 2 1 3 27 27 H 1.09000 * 109.47486 * 59.99398 * 6 4 3 28 28 H 1.09002 * 109.46716 * 299.99480 * 6 4 3 29 29 H 1.09004 * 109.46976 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47380 * 300.00211 * 9 7 6 31 31 H 1.09001 * 109.46989 * 60.00699 * 9 7 6 32 32 H 1.08993 * 109.47194 * 179.97438 * 10 7 6 33 33 H 1.09002 * 109.46695 * 59.99734 * 10 7 6 34 34 H 1.08992 * 109.47063 * 299.99823 * 11 10 7 35 35 H 1.09004 * 109.46733 * 179.97438 * 11 10 7 36 36 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9386 1.5006 1.4433 7 6 5.4640 1.6208 1.4439 8 1 5.8257 1.6500 2.4717 9 6 6.0708 0.4152 0.7234 10 6 5.8746 2.9060 0.7225 11 6 5.3667 2.8655 -0.7202 12 6 3.8409 2.7456 -0.7207 13 1 3.4082 3.6043 -0.2072 14 6 3.3408 2.7058 -2.1417 15 1 2.7862 1.8491 -2.4951 16 6 3.5920 3.7626 -2.9909 17 7 4.2677 4.8056 -2.5606 18 14 2.9726 3.7128 -4.7525 19 1 1.6134 4.3076 -4.8163 20 1 3.8932 4.4874 -5.6229 21 1 2.9188 2.3038 -5.2187 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.6465 0.5848 1.9571 28 1 3.5060 2.3592 1.9568 29 1 7.1575 0.5006 0.7242 30 1 5.7782 -0.5004 1.2373 31 1 5.7091 0.3864 -0.3045 32 1 6.9611 2.9919 0.7233 33 1 5.4422 3.7648 1.2359 34 1 5.7991 2.0067 -1.2336 35 1 5.6589 3.7813 -1.2341 36 1 4.4447 5.5489 -3.1582 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259603583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -93.837860 kcal Electronic energy + Delta-G solvation = -15222.761064 eV Core-core repulsion = 12898.086273 eV Total energy + Delta-G solvation = -2324.674792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38436 -37.68823 -35.15596 -32.55448 -31.69689 -30.02266 -28.21409 -26.07587 -23.83174 -22.82430 -22.26306 -19.38160 -18.39756 -17.72641 -16.65867 -16.31777 -15.87484 -15.09360 -14.65345 -14.60153 -14.53357 -13.96188 -13.51416 -13.07711 -13.05446 -12.91395 -12.83695 -12.57967 -12.36287 -12.18356 -11.94946 -11.77636 -11.66800 -11.41733 -11.10906 -10.94644 -10.57702 -10.34297 -9.95095 -8.04045 -6.15718 1.39231 1.40265 1.50030 2.44867 3.02367 3.24988 3.98273 4.04584 4.14872 4.21971 4.34538 4.52238 4.55030 4.58397 4.72377 4.77600 4.81748 4.89279 4.91992 4.97484 5.08399 5.15763 5.21133 5.27541 5.31480 5.38452 5.43190 5.56598 5.65266 5.72165 5.98187 6.15481 6.43864 6.73093 6.93426 7.49760 8.99923 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.013455 C = 0.009137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.197475 B = 2080.510067 C = 3063.868609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.105 3.895 5 H 0.048 0.952 6 C -0.128 4.128 7 C -0.081 4.081 8 H 0.087 0.913 9 C -0.147 4.147 10 C -0.112 4.112 11 C -0.100 4.100 12 C 0.052 3.948 13 H -0.014 1.014 14 C -0.515 4.515 15 H 0.043 0.957 16 C 0.010 3.990 17 N -0.919 5.919 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -9.530 6.885 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.048 3.952 5 H 0.066 0.934 6 C -0.166 4.166 7 C -0.099 4.099 8 H 0.105 0.895 9 C -0.204 4.204 10 C -0.150 4.150 11 C -0.138 4.138 12 C 0.033 3.967 13 H 0.005 0.995 14 C -0.553 4.553 15 H 0.062 0.938 16 C -0.188 4.188 17 N -0.559 5.559 18 Si 0.775 3.225 19 H -0.207 1.207 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.066 0.934 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.202 -9.209 6.819 11.461 hybrid contribution -0.280 0.330 -1.156 1.234 sum -0.078 -8.880 5.663 10.532 Atomic orbital electron populations 1.21727 0.92933 1.03168 1.02252 1.22615 0.96459 0.84093 0.99682 1.87943 1.22515 1.26805 1.95031 1.22197 0.79599 0.98615 0.94792 0.93355 1.22016 0.96405 1.01490 0.96640 1.21038 0.93833 0.95193 0.99838 0.89507 1.21902 1.00875 0.97290 1.00311 1.21618 0.99937 0.97158 0.96261 1.21424 0.96209 1.01033 0.95178 1.18691 0.93050 0.91381 0.93550 0.99545 1.21401 1.33513 1.03103 0.97292 0.93823 1.25683 0.95639 0.95286 1.02163 1.70023 1.41419 1.07729 1.36729 0.85698 0.78070 0.78146 0.80592 1.20650 1.20647 1.19373 0.93448 0.88659 0.92076 0.94550 0.92520 0.90983 0.93159 0.91742 0.91518 0.93767 0.91660 0.93977 0.94315 0.92272 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 10.28 71.98 0.74 -3.23 16 2 C 0.05 1.60 6.47 71.98 0.47 2.06 16 3 O -0.40 -17.79 9.58 -148.98 -1.43 -19.21 16 4 C 0.11 4.54 1.72 30.59 0.05 4.60 16 5 H 0.05 2.06 6.07 -2.39 -0.01 2.04 16 6 C -0.13 -4.51 5.07 30.60 0.15 -4.36 16 7 C -0.08 -2.54 3.19 -10.79 -0.03 -2.58 16 8 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 9 C -0.15 -4.18 8.50 71.98 0.61 -3.57 16 10 C -0.11 -4.25 5.45 30.59 0.17 -4.08 16 11 C -0.10 -4.79 4.71 30.61 0.14 -4.65 16 12 C 0.05 2.72 1.85 -11.52 -0.02 2.70 16 13 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 14 C -0.51 -29.77 8.23 25.60 0.21 -29.56 16 15 H 0.04 2.54 7.70 -2.91 -0.02 2.52 16 16 C 0.01 0.57 5.30 84.65 0.45 1.02 16 17 N -0.92 -54.82 11.32 21.45 0.24 -54.57 16 18 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.22 8.09 -2.39 -0.02 1.20 16 26 H 0.06 1.61 7.87 -2.39 -0.02 1.59 16 27 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.47 4.81 -2.39 -0.01 1.46 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 1.80 6.43 -2.39 -0.02 1.78 16 35 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -64.35 277.15 4.80 -59.55 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.02 Total: 8.38 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 2.94 Total: -41.65 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.24 Total: -54.57 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.43 Total: -19.21 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -64.35 4.80 -59.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259603583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.287 kcal (2) G-P(sol) polarization free energy of solvation -64.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds