Wall clock time and date at job start Mon Mar 30 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46957 * 2 1 4 4 C 1.42896 * 113.99877 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47251 * 29.99960 * 4 3 2 6 6 C 1.53002 * 109.47217 * 269.99964 * 4 3 2 7 7 C 1.52997 * 109.46978 * 300.00325 * 6 4 3 8 8 H 1.09001 * 109.47375 * 59.99908 * 7 6 4 9 9 C 1.52997 * 109.47232 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47164 * 299.99874 * 7 6 4 11 11 C 1.52997 * 109.47127 * 59.99836 * 10 7 6 12 12 C 1.52996 * 109.47260 * 150.00105 * 4 3 2 13 13 H 1.09001 * 109.47372 * 180.02562 * 12 4 3 14 14 C 1.50703 * 109.46946 * 299.99894 * 12 4 3 15 15 H 1.07998 * 120.00275 * 359.97438 * 14 12 4 16 16 C 1.37884 * 119.99709 * 180.02562 * 14 12 4 17 17 N 1.31518 * 120.00224 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99653 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47371 * 119.99834 * 18 16 14 21 21 H 1.48504 * 109.46979 * 239.99734 * 18 16 14 22 22 H 1.08994 * 109.47056 * 60.00315 * 1 2 3 23 23 H 1.09002 * 109.46782 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47203 * 300.00013 * 1 2 3 25 25 H 1.09004 * 109.47185 * 240.00528 * 2 1 3 26 26 H 1.08995 * 109.47591 * 120.00230 * 2 1 3 27 27 H 1.09002 * 109.47097 * 60.00127 * 6 4 3 28 28 H 1.09001 * 109.47142 * 180.02562 * 6 4 3 29 29 H 1.09001 * 109.47289 * 60.00075 * 9 7 6 30 30 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 299.99992 * 9 7 6 32 32 H 1.08998 * 109.46505 * 299.99708 * 10 7 6 33 33 H 1.08996 * 109.46884 * 180.02562 * 10 7 6 34 34 H 1.09002 * 109.47153 * 180.02562 * 11 10 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 11 10 7 36 36 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5003 1.4417 7 6 3.3331 2.7052 2.1634 8 1 2.2464 2.6191 2.1638 9 6 3.8415 2.7449 3.6058 10 6 3.7425 3.9910 1.4421 11 6 3.2335 3.9509 -0.0002 12 6 3.8403 2.7459 -0.7218 13 1 4.9269 2.8317 -0.7226 14 6 3.3389 2.7064 -2.1424 15 1 2.7841 1.8498 -2.4957 16 6 3.5895 3.7635 -2.9915 17 7 4.2655 4.8065 -2.5614 18 14 2.9674 3.7149 -4.7522 19 1 2.2402 2.4413 -4.9853 20 1 2.0498 4.8591 -4.9848 21 1 4.1182 3.8054 -5.6864 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.6482 0.5843 1.9555 28 1 5.0264 1.5868 1.4413 29 1 4.9282 2.8308 3.6058 30 1 3.4096 3.6036 4.1199 31 1 3.5495 1.8289 4.1194 32 1 4.8290 4.0770 1.4418 33 1 3.3105 4.8493 1.9566 34 1 3.5256 4.8667 -0.5141 35 1 2.1469 3.8648 0.0003 36 1 4.4414 5.5502 -3.1587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259603588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:35 Heat of formation + Delta-G solvation = -79.761772 kcal Electronic energy + Delta-G solvation = -15216.819272 eV Core-core repulsion = 12892.754865 eV Total energy + Delta-G solvation = -2324.064407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.62418 -35.73105 -33.29070 -31.16519 -30.09784 -28.66420 -26.60858 -23.54390 -22.29718 -21.41025 -20.05871 -18.63561 -16.28535 -15.49454 -15.12043 -14.69754 -13.93283 -13.80269 -13.28787 -12.91638 -12.46782 -12.25200 -12.01985 -11.74908 -11.44677 -11.31995 -10.99932 -10.89191 -10.79900 -10.57402 -10.44658 -10.02334 -10.00662 -9.72742 -9.39973 -8.95634 -8.54676 -8.41848 -8.15461 -5.88229 -3.91890 3.35273 3.43144 3.47676 4.52198 4.57638 5.41205 5.44076 5.48152 5.51291 5.60804 5.68941 5.83761 5.96652 6.01956 6.13092 6.20471 6.30327 6.34334 6.39742 6.46459 6.49726 6.54468 6.62296 6.79705 6.81959 7.03821 7.14571 7.37149 7.59471 7.85236 8.02988 8.24186 8.30490 8.59716 9.09678 9.70461 11.17532 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.011957 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.629074 B = 2341.099825 C = 3141.601253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.360 6.360 4 C 0.099 3.901 5 H 0.041 0.959 6 C -0.132 4.132 7 C -0.084 4.084 8 H 0.069 0.931 9 C -0.145 4.145 10 C -0.112 4.112 11 C -0.105 4.105 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.496 4.496 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.287 1.287 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -6.069 7.699 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.042 3.958 5 H 0.060 0.940 6 C -0.170 4.170 7 C -0.102 4.102 8 H 0.088 0.912 9 C -0.202 4.202 10 C -0.150 4.150 11 C -0.143 4.143 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.534 4.534 15 H 0.073 0.927 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.213 1.213 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.646 -5.740 7.632 9.909 hybrid contribution -0.124 -0.258 -0.932 0.975 sum -2.770 -5.998 6.700 9.410 Atomic orbital electron populations 1.21690 0.94885 1.01004 1.02854 1.22326 0.94816 0.86356 0.98677 1.88019 1.21961 1.23206 1.94682 1.22328 0.79998 1.00514 0.93001 0.94047 1.22091 1.00093 0.97209 0.97620 1.20999 1.00373 0.95792 0.93053 0.91242 1.21869 1.00723 1.00438 0.97205 1.21672 0.99857 0.94992 0.98436 1.21501 0.98887 1.02722 0.91212 1.18782 0.95809 0.88410 0.93410 0.94810 1.21149 1.33878 1.03240 0.95139 0.92719 1.24940 0.95381 0.95654 0.98235 1.69893 1.40853 1.07364 1.35227 0.86598 0.78492 0.77896 0.85355 1.19939 1.21173 1.21290 0.91872 0.92252 0.92416 0.94262 0.94978 0.93755 0.91988 0.93271 0.93350 0.93728 0.93374 0.94131 0.89379 0.93974 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 37.16 0.38 -1.76 16 2 C 0.06 0.95 6.47 37.16 0.24 1.19 16 3 O -0.36 -7.66 8.23 -35.23 -0.29 -7.95 16 4 C 0.10 2.12 2.30 -26.73 -0.06 2.06 16 5 H 0.04 0.88 7.79 -51.93 -0.40 0.47 16 6 C -0.13 -2.42 4.91 -26.73 -0.13 -2.55 16 7 C -0.08 -1.50 2.57 -90.62 -0.23 -1.74 16 8 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 9 C -0.14 -2.13 9.19 37.16 0.34 -1.79 16 10 C -0.11 -2.26 5.21 -26.73 -0.14 -2.40 16 11 C -0.11 -2.57 4.84 -26.73 -0.13 -2.70 16 12 C 0.05 1.37 1.94 -91.77 -0.18 1.19 16 13 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 14 C -0.50 -13.84 8.23 -34.44 -0.28 -14.12 16 15 H 0.05 1.54 7.70 -52.49 -0.40 1.14 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.03 0.50 7.87 -51.93 -0.41 0.09 16 27 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 35 H 0.04 1.07 7.68 -51.93 -0.40 0.67 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -28.73 282.11 -7.24 -35.97 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.52 Total: -2.77 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -0.29 Total: -21.07 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.63 Total: -25.22 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.29 Total: -7.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.73 -7.24 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259603588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.791 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds