Wall clock time and date at job start Mon Mar 30 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46957 * 2 1 4 4 C 1.42896 * 113.99877 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47251 * 29.99960 * 4 3 2 6 6 C 1.53002 * 109.47217 * 269.99964 * 4 3 2 7 7 C 1.52997 * 109.46978 * 300.00325 * 6 4 3 8 8 H 1.09001 * 109.47375 * 59.99908 * 7 6 4 9 9 C 1.52997 * 109.47232 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47164 * 299.99874 * 7 6 4 11 11 C 1.52997 * 109.47127 * 59.99836 * 10 7 6 12 12 C 1.52996 * 109.47260 * 150.00105 * 4 3 2 13 13 H 1.09001 * 109.47372 * 180.02562 * 12 4 3 14 14 C 1.50703 * 109.46946 * 299.99894 * 12 4 3 15 15 H 1.07998 * 120.00275 * 359.97438 * 14 12 4 16 16 C 1.37884 * 119.99709 * 180.02562 * 14 12 4 17 17 N 1.31518 * 120.00224 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99653 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47371 * 119.99834 * 18 16 14 21 21 H 1.48504 * 109.46979 * 239.99734 * 18 16 14 22 22 H 1.08994 * 109.47056 * 60.00315 * 1 2 3 23 23 H 1.09002 * 109.46782 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47203 * 300.00013 * 1 2 3 25 25 H 1.09004 * 109.47185 * 240.00528 * 2 1 3 26 26 H 1.08995 * 109.47591 * 120.00230 * 2 1 3 27 27 H 1.09002 * 109.47097 * 60.00127 * 6 4 3 28 28 H 1.09001 * 109.47142 * 180.02562 * 6 4 3 29 29 H 1.09001 * 109.47289 * 60.00075 * 9 7 6 30 30 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 299.99992 * 9 7 6 32 32 H 1.08998 * 109.46505 * 299.99708 * 10 7 6 33 33 H 1.08996 * 109.46884 * 180.02562 * 10 7 6 34 34 H 1.09002 * 109.47153 * 180.02562 * 11 10 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 11 10 7 36 36 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5003 1.4417 7 6 3.3331 2.7052 2.1634 8 1 2.2464 2.6191 2.1638 9 6 3.8415 2.7449 3.6058 10 6 3.7425 3.9910 1.4421 11 6 3.2335 3.9509 -0.0002 12 6 3.8403 2.7459 -0.7218 13 1 4.9269 2.8317 -0.7226 14 6 3.3389 2.7064 -2.1424 15 1 2.7841 1.8498 -2.4957 16 6 3.5895 3.7635 -2.9915 17 7 4.2655 4.8065 -2.5614 18 14 2.9674 3.7149 -4.7522 19 1 2.2402 2.4413 -4.9853 20 1 2.0498 4.8591 -4.9848 21 1 4.1182 3.8054 -5.6864 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.6482 0.5843 1.9555 28 1 5.0264 1.5868 1.4413 29 1 4.9282 2.8308 3.6058 30 1 3.4096 3.6036 4.1199 31 1 3.5495 1.8289 4.1194 32 1 4.8290 4.0770 1.4418 33 1 3.3105 4.8493 1.9566 34 1 3.5256 4.8667 -0.5141 35 1 2.1469 3.8648 0.0003 36 1 4.4414 5.5502 -3.1587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259603588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:35 Heat of formation + Delta-G solvation = -95.488989 kcal Electronic energy + Delta-G solvation = -15217.501255 eV Core-core repulsion = 12892.754865 eV Total energy + Delta-G solvation = -2324.746390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26334 -37.27364 -35.23803 -32.76381 -31.74370 -30.24633 -28.32172 -25.38016 -23.63539 -23.10451 -21.72842 -20.29148 -18.39286 -17.03862 -16.80109 -16.46015 -15.68481 -15.26120 -14.89326 -14.35613 -14.07750 -13.89467 -13.54970 -13.19668 -12.94734 -12.79088 -12.74287 -12.59299 -12.42275 -12.38385 -11.93185 -11.74746 -11.64374 -11.54954 -11.12913 -10.78207 -10.43140 -10.39602 -9.94719 -8.03818 -6.14977 1.38147 1.40149 1.51306 2.44983 3.07738 3.25311 3.99557 4.06991 4.13572 4.25972 4.41760 4.56681 4.58915 4.66104 4.69353 4.82985 4.86050 4.95681 4.96281 5.04537 5.08071 5.13534 5.15798 5.30974 5.33260 5.36635 5.48592 5.61015 5.72017 5.75431 6.01123 6.19591 6.43907 6.74729 6.93668 7.50236 9.00188 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.011957 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.629074 B = 2341.099825 C = 3141.601253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.385 6.385 4 C 0.103 3.897 5 H 0.037 0.963 6 C -0.126 4.126 7 C -0.079 4.079 8 H 0.059 0.941 9 C -0.137 4.137 10 C -0.106 4.106 11 C -0.095 4.095 12 C 0.049 3.951 13 H 0.007 0.993 14 C -0.513 4.513 15 H 0.044 0.956 16 C 0.009 3.991 17 N -0.918 5.918 18 Si 0.949 3.051 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.279 1.279 22 H 0.045 0.955 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 -7.279 8.939 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 O -0.305 6.305 4 C 0.045 3.955 5 H 0.055 0.945 6 C -0.164 4.164 7 C -0.098 4.098 8 H 0.078 0.922 9 C -0.194 4.194 10 C -0.144 4.144 11 C -0.133 4.133 12 C 0.031 3.969 13 H 0.025 0.975 14 C -0.551 4.551 15 H 0.062 0.938 16 C -0.188 4.188 17 N -0.559 5.559 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.205 1.205 22 H 0.065 0.935 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.167 -6.961 8.877 11.717 hybrid contribution 0.016 0.101 -1.350 1.354 sum -3.151 -6.860 7.526 10.660 Atomic orbital electron populations 1.21698 0.92989 1.02999 1.02214 1.22605 0.96389 0.84491 0.99498 1.87971 1.21514 1.26046 1.94935 1.22102 0.80626 0.97966 0.94763 0.94522 1.22032 1.00209 0.98667 0.95465 1.20935 0.99830 0.93979 0.95007 0.92207 1.21783 1.01068 1.02025 0.94573 1.21588 0.99598 0.97297 0.95911 1.21273 0.97488 1.00721 0.93863 1.18723 0.94040 0.91113 0.93065 0.97541 1.21436 1.33825 1.02936 0.96934 0.93777 1.25678 0.95677 0.95402 1.02063 1.70024 1.41636 1.07792 1.36420 0.85649 0.78107 0.77886 0.80865 1.19559 1.20847 1.20500 0.93531 0.88926 0.92020 0.94821 0.92662 0.91064 0.91595 0.92655 0.92310 0.91737 0.93534 0.92824 0.92852 0.95872 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.05 1.53 6.47 71.98 0.47 1.99 16 3 O -0.39 -16.25 8.23 -148.98 -1.23 -17.47 16 4 C 0.10 4.40 2.30 30.59 0.07 4.47 16 5 H 0.04 1.56 7.79 -2.38 -0.02 1.54 16 6 C -0.13 -4.35 4.91 30.59 0.15 -4.20 16 7 C -0.08 -2.68 2.57 -10.79 -0.03 -2.70 16 8 H 0.06 2.16 7.68 -2.39 -0.02 2.14 16 9 C -0.14 -3.54 9.19 71.98 0.66 -2.87 16 10 C -0.11 -4.24 5.21 30.60 0.16 -4.08 16 11 C -0.10 -4.78 4.84 30.59 0.15 -4.64 16 12 C 0.05 2.54 1.94 -11.54 -0.02 2.51 16 13 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 14 C -0.51 -29.46 8.23 25.60 0.21 -29.25 16 15 H 0.04 2.56 7.70 -2.91 -0.02 2.53 16 16 C 0.01 0.54 5.30 84.66 0.45 0.99 16 17 N -0.92 -54.60 11.32 21.45 0.24 -54.36 16 18 Si 0.95 45.46 29.54 68.60 2.03 47.48 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 1.12 8.08 -2.38 -0.02 1.10 16 26 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 27 H 0.07 2.09 7.87 -2.39 -0.02 2.08 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 3.02 6.07 -2.39 -0.01 3.01 16 35 H 0.02 1.20 7.68 -2.39 -0.02 1.18 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -62.95 282.11 5.05 -57.90 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.01 Total: 7.35 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 3.00 Total: -40.90 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.24 Total: -54.36 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.23 Total: -17.47 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -62.95 5.05 -57.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259603588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.590 kcal (2) G-P(sol) polarization free energy of solvation -62.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds