Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46729 * 2 1 4 4 C 1.42898 * 113.99554 * 179.97438 * 3 2 1 5 5 H 1.08998 * 108.78836 * 28.40877 * 4 3 2 6 6 C 1.54065 * 108.81642 * 269.99712 * 4 3 2 7 7 C 1.50468 * 112.50193 * 197.42437 * 6 4 3 8 8 C 1.54240 * 108.52000 * 94.15189 * 7 6 4 9 9 C 1.45543 * 112.40488 * 280.01596 * 8 7 6 10 10 C 1.54240 * 112.40882 * 61.93687 * 9 8 7 11 11 C 1.50476 * 108.52042 * 280.01080 * 10 9 8 12 12 H 1.09004 * 108.87169 * 333.37442 * 11 10 9 13 13 C 1.50697 * 108.87914 * 214.92679 * 11 10 9 14 14 H 1.07999 * 120.00079 * 242.53078 * 13 11 10 15 15 C 1.37884 * 119.99771 * 62.53129 * 13 11 10 16 16 N 1.31512 * 120.00331 * 9.35072 * 15 13 11 17 17 Si 1.86800 * 119.99782 * 189.35722 * 15 13 11 18 18 H 1.48500 * 109.47359 * 94.99179 * 17 15 13 19 19 H 1.48499 * 109.46944 * 214.99588 * 17 15 13 20 20 H 1.48510 * 109.47098 * 334.99139 * 17 15 13 21 21 H 1.08996 * 109.47197 * 60.00322 * 1 2 3 22 22 H 1.09008 * 109.46608 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47487 * 300.00099 * 1 2 3 24 24 H 1.08997 * 109.47487 * 239.99901 * 2 1 3 25 25 H 1.08996 * 109.47197 * 119.99678 * 2 1 3 26 26 H 1.08996 * 108.87657 * 318.20426 * 6 4 3 27 27 H 1.09005 * 108.87551 * 76.64383 * 6 4 3 28 28 H 1.09001 * 109.62981 * 213.86175 * 7 6 4 29 29 H 1.09002 * 109.63236 * 334.44245 * 7 6 4 30 30 H 1.09004 * 108.89435 * 40.77006 * 8 7 6 31 31 H 1.09003 * 108.89702 * 159.25941 * 8 7 6 32 32 H 1.09004 * 108.89108 * 182.68470 * 9 8 7 33 33 H 1.08994 * 108.89977 * 301.27478 * 9 8 7 34 34 H 1.09003 * 109.62988 * 39.71862 * 10 9 8 35 35 H 1.08996 * 109.63065 * 160.10872 * 10 9 8 36 36 H 0.96994 * 120.00190 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8526 0.5830 -0.4900 6 6 3.9255 1.4997 1.4591 7 6 5.3293 2.0285 1.5769 8 6 5.2602 3.5430 1.8607 9 6 5.0186 4.3227 0.6557 10 6 3.6670 3.9813 -0.0044 11 6 3.8301 2.7145 -0.8000 12 1 4.8725 2.6214 -1.1048 13 6 2.9696 2.7996 -2.0342 14 1 2.1640 2.0953 -2.1804 15 6 3.2108 3.7767 -2.9767 16 7 4.2960 4.5151 -2.8955 17 14 1.9960 4.0517 -4.3688 18 1 1.0559 5.1397 -3.9978 19 1 2.7327 4.4325 -5.6006 20 1 1.2335 2.8012 -4.6147 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.2589 2.1366 2.0405 27 1 3.8931 0.4906 1.8699 28 1 5.8425 1.5254 2.3964 29 1 5.8655 1.8549 0.6439 30 1 4.4555 3.7326 2.5711 31 1 6.2030 3.8623 2.3047 32 1 5.0281 5.3819 0.9130 33 1 5.8182 4.1260 -0.0583 34 1 2.9098 3.8350 0.7659 35 1 3.3658 4.7951 -0.6640 36 1 4.4658 5.2022 -3.5587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259702372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -72.277766 kcal Electronic energy + Delta-G solvation = -15289.170361 eV Core-core repulsion = 12965.430485 eV Total energy + Delta-G solvation = -2323.739876 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.58573 -36.16367 -33.17278 -31.42253 -30.46472 -29.33462 -25.37944 -23.42045 -22.53252 -22.07902 -19.64328 -18.34856 -16.48959 -15.57827 -15.18778 -14.70543 -14.17866 -13.78496 -13.54431 -12.71899 -12.42328 -12.28118 -12.11323 -11.84774 -11.52054 -11.16841 -10.95517 -10.87758 -10.70878 -10.48530 -10.25003 -9.96575 -9.84098 -9.52701 -9.46886 -8.96102 -8.58187 -8.34278 -8.15301 -5.87985 -3.85693 3.39107 3.45975 3.49922 4.54804 4.58657 5.36289 5.45070 5.47611 5.53832 5.57304 5.69401 5.84375 5.99075 6.09695 6.12887 6.19751 6.30470 6.36112 6.39628 6.47763 6.53762 6.60913 6.82711 6.85462 6.93325 7.01124 7.08747 7.42982 7.63275 7.82849 8.03217 8.15112 8.28458 8.66689 9.19218 9.75261 11.21115 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.014571 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.070261 B = 1921.102302 C = 3025.461805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.362 6.362 4 C 0.102 3.898 5 H 0.037 0.963 6 C -0.137 4.137 7 C -0.111 4.111 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.084 4.084 11 C 0.050 3.950 12 H 0.040 0.960 13 C -0.497 4.497 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.276 1.276 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -5.585 7.477 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.044 3.956 5 H 0.055 0.945 6 C -0.175 4.175 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.156 4.156 10 C -0.122 4.122 11 C 0.032 3.968 12 H 0.058 0.942 13 C -0.535 4.535 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.201 1.201 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.046 -5.282 7.379 9.134 hybrid contribution -0.463 -0.025 -0.775 0.903 sum -1.509 -5.306 6.604 8.605 Atomic orbital electron populations 1.21697 0.94900 1.00997 1.02888 1.22334 0.94851 0.86313 0.98673 1.88055 1.22176 1.23270 1.94619 1.22826 0.79764 1.00310 0.92651 0.94488 1.21860 0.97032 0.99594 0.99016 1.21215 0.96641 0.95817 1.01143 1.20482 0.99946 0.95207 0.98815 1.20492 1.00893 0.97634 0.96615 1.21255 0.93065 1.00634 0.97290 1.18656 0.97299 0.88269 0.92572 0.94239 1.21225 1.14897 1.14217 1.03157 0.92125 1.24926 0.95059 0.96700 0.97600 1.69998 1.24419 1.22647 1.35998 0.86709 0.81725 0.78403 0.81902 1.20942 1.21671 1.20089 0.91839 0.92247 0.92415 0.94176 0.95034 0.91670 0.94125 0.93132 0.91378 0.93212 0.93885 0.94414 0.92127 0.94942 0.91115 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 37.16 0.38 -1.81 16 2 C 0.06 0.96 6.44 37.16 0.24 1.20 16 3 O -0.36 -7.85 8.47 -35.23 -0.30 -8.15 16 4 C 0.10 2.18 2.27 -25.62 -0.06 2.12 16 5 H 0.04 0.78 7.72 -51.93 -0.40 0.38 16 6 C -0.14 -2.47 4.90 -27.44 -0.13 -2.60 16 7 C -0.11 -1.86 5.61 -27.35 -0.15 -2.02 16 8 C -0.11 -1.85 5.26 -29.60 -0.16 -2.00 16 9 C -0.12 -2.44 5.26 -29.60 -0.16 -2.60 16 10 C -0.08 -2.01 4.79 -27.34 -0.13 -2.14 16 11 C 0.05 1.25 1.39 -92.48 -0.13 1.12 16 12 H 0.04 1.06 6.59 -51.93 -0.34 0.72 16 13 C -0.50 -13.83 7.99 -34.44 -0.28 -14.10 16 14 H 0.06 1.72 6.92 -52.49 -0.36 1.36 16 15 C 0.06 1.61 4.81 -17.82 -0.09 1.53 16 16 N -0.89 -25.70 12.31 55.43 0.68 -25.02 16 17 Si 0.88 21.92 29.55 -169.99 -5.02 16.90 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.21 6.63 -51.93 -0.34 0.86 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.23 6.98 -51.93 -0.36 0.87 16 30 H 0.05 0.83 7.47 -51.93 -0.39 0.44 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.34 7.46 -51.93 -0.39 0.96 16 34 H 0.03 0.75 6.98 -51.93 -0.36 0.39 16 35 H 0.07 1.91 6.46 -51.93 -0.34 1.57 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 275.36 15.07 4.15 4.15 Total: -1.00 -28.77 275.36 -7.37 -36.14 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.22 Total: -2.71 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -0.66 Total: -21.30 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.68 Total: -25.02 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.30 Total: -8.15 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.77 -7.37 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.140 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds