Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46729 * 2 1 4 4 C 1.42898 * 113.99554 * 179.97438 * 3 2 1 5 5 H 1.08998 * 108.78836 * 28.40877 * 4 3 2 6 6 C 1.54065 * 108.81642 * 269.99712 * 4 3 2 7 7 C 1.50468 * 112.50193 * 197.42437 * 6 4 3 8 8 C 1.54240 * 108.52000 * 94.15189 * 7 6 4 9 9 C 1.45543 * 112.40488 * 280.01596 * 8 7 6 10 10 C 1.54240 * 112.40882 * 61.93687 * 9 8 7 11 11 C 1.50476 * 108.52042 * 280.01080 * 10 9 8 12 12 H 1.09004 * 108.87169 * 333.37442 * 11 10 9 13 13 C 1.50697 * 108.87914 * 214.92679 * 11 10 9 14 14 H 1.07999 * 120.00079 * 242.53078 * 13 11 10 15 15 C 1.37884 * 119.99771 * 62.53129 * 13 11 10 16 16 N 1.31512 * 120.00331 * 9.35072 * 15 13 11 17 17 Si 1.86800 * 119.99782 * 189.35722 * 15 13 11 18 18 H 1.48500 * 109.47359 * 94.99179 * 17 15 13 19 19 H 1.48499 * 109.46944 * 214.99588 * 17 15 13 20 20 H 1.48510 * 109.47098 * 334.99139 * 17 15 13 21 21 H 1.08996 * 109.47197 * 60.00322 * 1 2 3 22 22 H 1.09008 * 109.46608 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47487 * 300.00099 * 1 2 3 24 24 H 1.08997 * 109.47487 * 239.99901 * 2 1 3 25 25 H 1.08996 * 109.47197 * 119.99678 * 2 1 3 26 26 H 1.08996 * 108.87657 * 318.20426 * 6 4 3 27 27 H 1.09005 * 108.87551 * 76.64383 * 6 4 3 28 28 H 1.09001 * 109.62981 * 213.86175 * 7 6 4 29 29 H 1.09002 * 109.63236 * 334.44245 * 7 6 4 30 30 H 1.09004 * 108.89435 * 40.77006 * 8 7 6 31 31 H 1.09003 * 108.89702 * 159.25941 * 8 7 6 32 32 H 1.09004 * 108.89108 * 182.68470 * 9 8 7 33 33 H 1.08994 * 108.89977 * 301.27478 * 9 8 7 34 34 H 1.09003 * 109.62988 * 39.71862 * 10 9 8 35 35 H 1.08996 * 109.63065 * 160.10872 * 10 9 8 36 36 H 0.96994 * 120.00190 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8526 0.5830 -0.4900 6 6 3.9255 1.4997 1.4591 7 6 5.3293 2.0285 1.5769 8 6 5.2602 3.5430 1.8607 9 6 5.0186 4.3227 0.6557 10 6 3.6670 3.9813 -0.0044 11 6 3.8301 2.7145 -0.8000 12 1 4.8725 2.6214 -1.1048 13 6 2.9696 2.7996 -2.0342 14 1 2.1640 2.0953 -2.1804 15 6 3.2108 3.7767 -2.9767 16 7 4.2960 4.5151 -2.8955 17 14 1.9960 4.0517 -4.3688 18 1 1.0559 5.1397 -3.9978 19 1 2.7327 4.4325 -5.6006 20 1 1.2335 2.8012 -4.6147 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.2589 2.1366 2.0405 27 1 3.8931 0.4906 1.8699 28 1 5.8425 1.5254 2.3964 29 1 5.8655 1.8549 0.6439 30 1 4.4555 3.7326 2.5711 31 1 6.2030 3.8623 2.3047 32 1 5.0281 5.3819 0.9130 33 1 5.8182 4.1260 -0.0583 34 1 2.9098 3.8350 0.7659 35 1 3.3658 4.7951 -0.6640 36 1 4.4658 5.2022 -3.5587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -88.304377 kcal Electronic energy + Delta-G solvation = -15289.865326 eV Core-core repulsion = 12965.430485 eV Total energy + Delta-G solvation = -2324.434842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21996 -37.71434 -35.14594 -32.89199 -32.23907 -30.90150 -27.32260 -25.05633 -24.26096 -23.49369 -21.18757 -20.09790 -18.48531 -17.17739 -16.94259 -16.32391 -15.98758 -15.33752 -15.04726 -14.23978 -14.11842 -14.01496 -13.65214 -13.32019 -13.06405 -12.77753 -12.72078 -12.61968 -12.37907 -12.26797 -12.02929 -11.57866 -11.38673 -11.23433 -11.11735 -10.74629 -10.49876 -10.34121 -9.96206 -8.04863 -6.08262 1.38768 1.41123 1.50346 2.47564 3.07552 3.27972 3.93619 4.04855 4.16813 4.24598 4.35603 4.51720 4.55528 4.58547 4.62552 4.72657 4.82934 4.90320 4.98852 5.04403 5.11153 5.23467 5.30179 5.38253 5.38459 5.43430 5.53019 5.62047 5.73726 5.83301 5.97929 6.15613 6.46866 6.77461 7.03228 7.55353 9.03299 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.014571 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.070261 B = 1921.102302 C = 3025.461805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.104 3.896 5 H 0.031 0.969 6 C -0.128 4.128 7 C -0.109 4.109 8 C -0.107 4.107 9 C -0.108 4.108 10 C -0.076 4.076 11 C 0.050 3.950 12 H 0.011 0.989 13 C -0.512 4.512 14 H 0.048 0.952 15 C 0.012 3.988 16 N -0.915 5.915 17 Si 0.940 3.060 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.044 0.956 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -6.598 8.995 11.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 O -0.311 6.311 4 C 0.046 3.954 5 H 0.050 0.950 6 C -0.166 4.166 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.145 4.145 10 C -0.114 4.114 11 C 0.032 3.968 12 H 0.028 0.972 13 C -0.551 4.551 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.767 3.233 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 H 0.064 0.936 22 H 0.111 0.889 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.391 -6.306 8.899 10.995 hybrid contribution -0.378 0.257 -1.277 1.356 sum -1.769 -6.049 7.622 9.890 Atomic orbital electron populations 1.21710 0.93062 1.03015 1.02206 1.22604 0.96394 0.84449 0.99495 1.87995 1.22034 1.26146 1.94907 1.22661 0.80166 0.97926 0.94610 0.95042 1.21774 0.97428 1.01293 0.96112 1.21241 0.96013 0.95748 1.01656 1.20448 1.01778 0.95089 0.97083 1.20374 0.97900 0.98802 0.97460 1.21053 0.95047 0.98709 0.96598 1.18569 0.95050 0.90664 0.92540 0.97151 1.21515 1.14926 1.13993 1.04626 0.93334 1.25596 0.96481 0.96636 0.99910 1.70102 1.25628 1.23032 1.36781 0.85816 0.79776 0.78259 0.79412 1.20668 1.21073 1.19718 0.93640 0.88879 0.91947 0.94843 0.92594 0.91929 0.91440 0.89463 0.93238 0.92045 0.91190 0.93810 0.94497 0.94606 0.95149 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 10.28 71.98 0.74 -3.23 16 2 C 0.05 1.57 6.44 71.98 0.46 2.03 16 3 O -0.39 -16.79 8.47 -148.98 -1.26 -18.05 16 4 C 0.10 4.41 2.27 31.32 0.07 4.48 16 5 H 0.03 1.33 7.72 -2.39 -0.02 1.31 16 6 C -0.13 -4.31 4.90 30.14 0.15 -4.16 16 7 C -0.11 -3.39 5.61 30.20 0.17 -3.22 16 8 C -0.11 -3.42 5.26 28.74 0.15 -3.27 16 9 C -0.11 -4.41 5.26 28.74 0.15 -4.26 16 10 C -0.08 -3.69 4.79 30.20 0.14 -3.55 16 11 C 0.05 2.55 1.39 -12.00 -0.02 2.54 16 12 H 0.01 0.59 6.59 -2.39 -0.02 0.57 16 13 C -0.51 -29.34 7.99 25.60 0.20 -29.14 16 14 H 0.05 2.83 6.92 -2.91 -0.02 2.81 16 15 C 0.01 0.67 4.81 84.66 0.41 1.07 16 16 N -0.92 -54.32 12.31 21.45 0.26 -54.05 16 17 Si 0.94 45.79 29.55 68.60 2.03 47.81 16 18 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 21 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.03 1.13 8.07 -2.39 -0.02 1.11 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.15 6.63 -2.39 -0.02 2.14 16 27 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.73 6.98 -2.39 -0.02 1.72 16 30 H 0.06 1.86 7.47 -2.39 -0.02 1.84 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.04 1.66 7.46 -2.39 -0.02 1.64 16 34 H 0.04 1.67 6.98 -2.39 -0.02 1.65 16 35 H 0.03 1.68 6.46 -2.39 -0.02 1.67 16 36 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -63.21 275.36 4.68 -58.53 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.02 Total: 6.47 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 2.63 Total: -40.71 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.26 Total: -54.05 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.26 Total: -18.05 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -63.21 4.68 -58.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.777 kcal (2) G-P(sol) polarization free energy of solvation -63.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds