Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47089 * 2 1 4 4 C 1.52998 * 109.47399 * 119.99950 * 2 1 3 5 5 H 1.09003 * 109.47350 * 184.73766 * 4 2 1 6 6 C 1.50694 * 109.47382 * 304.74533 * 4 2 1 7 7 H 1.08007 * 120.00168 * 84.51998 * 6 4 2 8 8 C 1.37872 * 120.00049 * 264.52550 * 6 4 2 9 9 N 1.31518 * 120.00236 * 0.06021 * 8 6 4 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47201 * 269.99680 * 10 8 6 12 12 H 1.48500 * 109.47396 * 29.99845 * 10 8 6 13 13 H 1.48503 * 109.47032 * 150.00139 * 10 8 6 14 14 C 1.53005 * 109.46721 * 64.74538 * 4 2 1 15 15 C 1.53175 * 109.54210 * 181.98120 * 14 4 2 16 16 C 1.53103 * 109.15911 * 183.24046 * 15 14 4 17 17 O 1.42902 * 109.48748 * 57.47045 * 16 15 14 18 18 C 1.42901 * 114.09885 * 298.89363 * 17 16 15 19 19 C 1.53091 * 109.41710 * 61.15380 * 18 17 16 20 20 H 1.08997 * 109.46545 * 301.79769 * 1 2 3 21 21 H 1.08994 * 109.46741 * 61.80002 * 1 2 3 22 22 H 1.08996 * 109.46946 * 181.79677 * 1 2 3 23 23 H 1.09004 * 109.47104 * 240.00427 * 2 1 3 24 24 H 1.09000 * 109.46786 * 55.11110 * 3 2 1 25 25 H 1.09001 * 109.46755 * 175.10495 * 3 2 1 26 26 H 1.08998 * 109.47152 * 295.10510 * 3 2 1 27 27 H 0.97004 * 119.99514 * 359.83436 * 9 8 6 28 28 H 1.08998 * 109.54054 * 302.15595 * 14 4 2 29 29 H 1.09006 * 109.52378 * 303.05413 * 15 14 4 30 30 H 1.08998 * 109.52522 * 63.24584 * 15 14 4 31 31 H 1.08997 * 109.40653 * 297.49242 * 16 15 14 32 32 H 1.09005 * 109.48581 * 177.50373 * 16 15 14 33 33 H 1.09000 * 109.47566 * 301.17268 * 18 17 16 34 34 H 1.09004 * 109.47686 * 181.14217 * 18 17 16 35 35 H 1.09001 * 109.52023 * 182.48342 * 19 18 17 36 36 H 1.09010 * 109.57082 * 62.32973 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1268 -0.6483 1.2927 6 6 1.4442 -0.0820 2.4769 7 1 0.4652 -0.3819 2.8208 8 6 2.1485 0.8858 3.1610 9 7 3.3400 1.2520 2.7416 10 14 1.4101 1.6777 4.6833 11 1 0.6298 2.8777 4.2879 12 1 0.5148 0.7065 5.3617 13 1 2.4988 2.0785 5.6103 14 6 1.6298 -2.1941 1.1909 15 6 2.0967 -2.9068 2.4638 16 6 1.7538 -4.3954 2.3608 17 8 2.3660 -4.9459 1.1928 18 6 1.9300 -4.3499 -0.0306 19 6 2.2820 -2.8600 -0.0246 20 1 -0.3632 0.5415 0.8734 21 1 -0.3632 0.4856 -0.9057 22 1 -0.3633 -1.0271 0.0322 23 1 1.8934 -0.5138 -0.8900 24 1 1.6069 1.9810 0.8430 25 1 3.1265 1.4437 0.0877 26 1 1.7501 1.9304 -0.9306 27 1 3.7242 0.8395 1.9522 28 1 0.5454 -2.2675 1.1088 29 1 3.1750 -2.7894 2.5724 30 1 1.5935 -2.4747 3.3287 31 1 0.6723 -4.5141 2.2946 32 1 2.1233 -4.9156 3.2446 33 1 0.8508 -4.4680 -0.1280 34 1 2.4265 -4.8374 -0.8696 35 1 1.9111 -2.3944 -0.9377 36 1 3.3641 -2.7406 0.0316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259733221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -81.387994 kcal Electronic energy + Delta-G solvation = -15396.084516 eV Core-core repulsion = 13071.949591 eV Total energy + Delta-G solvation = -2324.134925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04909 -36.52742 -32.55516 -31.91744 -30.51732 -27.11176 -26.05871 -24.17550 -22.92740 -21.93774 -19.61510 -18.75771 -16.19435 -15.67902 -15.52277 -14.59529 -13.93890 -13.76763 -13.63903 -13.22180 -12.94886 -12.51463 -11.85076 -11.67672 -11.33775 -11.05251 -10.84245 -10.77505 -10.70381 -10.23356 -10.17714 -10.12755 -9.89629 -9.68725 -9.57041 -9.09473 -8.71388 -8.27174 -8.20828 -6.25698 -3.94144 3.44244 3.46584 3.61899 4.28159 4.55609 5.34117 5.42964 5.44468 5.56674 5.66485 5.72590 5.86177 6.00064 6.06714 6.12971 6.20383 6.21496 6.42303 6.52270 6.55284 6.66839 6.78105 6.81581 6.91790 7.01215 7.09605 7.23238 7.29180 7.45614 7.59339 7.61910 7.65579 8.34901 8.51778 8.98073 9.75183 11.12351 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.011688 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.425740 B = 2394.955753 C = 2926.547212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.126 4.126 4 C 0.038 3.962 5 H 0.035 0.965 6 C -0.577 4.577 7 H 0.045 0.955 8 C 0.023 3.977 9 N -0.915 5.915 10 Si 1.060 2.940 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.287 1.287 14 C -0.073 4.073 15 C -0.133 4.133 16 C 0.058 3.942 17 O -0.392 6.392 18 C 0.063 3.937 19 C -0.154 4.154 20 H 0.064 0.936 21 H 0.024 0.976 22 H 0.038 0.962 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.019 0.981 27 H 0.272 0.728 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -6.568 -3.729 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.106 4.106 3 C -0.183 4.183 4 C 0.020 3.980 5 H 0.053 0.947 6 C -0.615 4.615 7 H 0.064 0.936 8 C -0.181 4.181 9 N -0.552 5.552 10 Si 0.889 3.111 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.212 1.212 14 C -0.092 4.092 15 C -0.170 4.170 16 C -0.018 4.018 17 O -0.312 6.312 18 C -0.014 4.014 19 C -0.192 4.192 20 H 0.083 0.917 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.324 -5.585 -2.525 6.972 hybrid contribution -0.547 -0.816 -1.240 1.582 sum -3.871 -6.400 -3.765 8.374 Atomic orbital electron populations 1.21710 0.96931 0.99935 1.00007 1.21278 0.94938 0.96181 0.98194 1.21678 1.00442 0.96833 0.99371 1.18991 0.96754 0.88938 0.93348 0.94705 1.21756 1.04503 1.23901 1.11336 0.93631 1.25590 0.95385 0.95416 1.01750 1.70789 1.15953 1.42446 1.26059 0.83670 0.75353 0.75956 0.76073 1.21738 1.21679 1.21239 1.21219 0.98503 0.97607 0.91868 1.22054 1.01913 0.92923 1.00154 1.22698 0.96328 0.95377 0.87438 1.87831 1.67826 1.60988 1.14509 1.22542 0.98218 0.93997 0.86614 1.22357 1.01608 0.94948 1.00244 0.91748 0.95706 0.94341 0.94999 0.91500 0.93727 0.96193 0.91544 0.92631 0.92171 0.89921 0.94073 0.89847 0.93999 0.90011 0.91517 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.63 37.16 0.32 -2.22 16 2 C -0.09 -1.85 2.52 -90.62 -0.23 -2.08 16 3 C -0.13 -2.79 7.91 37.16 0.29 -2.50 16 4 C 0.04 0.89 1.22 -91.77 -0.11 0.78 16 5 H 0.03 0.90 6.24 -51.93 -0.32 0.58 16 6 C -0.58 -14.73 5.01 -34.44 -0.17 -14.91 16 7 H 0.05 1.19 7.76 -52.48 -0.41 0.78 16 8 C 0.02 0.61 4.49 -17.82 -0.08 0.53 16 9 N -0.92 -26.16 12.96 55.43 0.72 -25.44 16 10 Si 1.06 24.55 29.90 -169.99 -5.08 19.47 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 C -0.07 -1.47 1.65 -90.44 -0.15 -1.62 16 15 C -0.13 -2.61 5.08 -26.59 -0.14 -2.74 16 16 C 0.06 0.97 6.84 37.21 0.25 1.22 16 17 O -0.39 -6.89 10.77 -35.23 -0.38 -7.27 16 18 C 0.06 0.99 6.84 37.20 0.25 1.24 16 19 C -0.15 -2.70 5.04 -26.60 -0.13 -2.84 16 20 H 0.06 1.38 7.12 -51.93 -0.37 1.01 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 23 H 0.03 0.64 6.34 -51.93 -0.33 0.31 16 24 H 0.07 1.65 6.78 -51.93 -0.35 1.29 16 25 H 0.04 1.03 7.09 -51.93 -0.37 0.66 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.27 7.76 5.04 -40.82 -0.21 7.55 16 28 H 0.06 1.12 6.42 -51.93 -0.33 0.79 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.72 7.29 -51.93 -0.38 1.35 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -27.43 268.40 -6.51 -33.94 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.92 Total: 0.39 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 0.11 Total: -25.13 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.72 Total: -25.44 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.38 Total: -7.27 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.43 -6.51 -33.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.452 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds