Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47089 * 2 1 4 4 C 1.52998 * 109.47399 * 119.99950 * 2 1 3 5 5 H 1.09003 * 109.47350 * 184.73766 * 4 2 1 6 6 C 1.50694 * 109.47382 * 304.74533 * 4 2 1 7 7 H 1.08007 * 120.00168 * 84.51998 * 6 4 2 8 8 C 1.37872 * 120.00049 * 264.52550 * 6 4 2 9 9 N 1.31518 * 120.00236 * 0.06021 * 8 6 4 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47201 * 269.99680 * 10 8 6 12 12 H 1.48500 * 109.47396 * 29.99845 * 10 8 6 13 13 H 1.48503 * 109.47032 * 150.00139 * 10 8 6 14 14 C 1.53005 * 109.46721 * 64.74538 * 4 2 1 15 15 C 1.53175 * 109.54210 * 181.98120 * 14 4 2 16 16 C 1.53103 * 109.15911 * 183.24046 * 15 14 4 17 17 O 1.42902 * 109.48748 * 57.47045 * 16 15 14 18 18 C 1.42901 * 114.09885 * 298.89363 * 17 16 15 19 19 C 1.53091 * 109.41710 * 61.15380 * 18 17 16 20 20 H 1.08997 * 109.46545 * 301.79769 * 1 2 3 21 21 H 1.08994 * 109.46741 * 61.80002 * 1 2 3 22 22 H 1.08996 * 109.46946 * 181.79677 * 1 2 3 23 23 H 1.09004 * 109.47104 * 240.00427 * 2 1 3 24 24 H 1.09000 * 109.46786 * 55.11110 * 3 2 1 25 25 H 1.09001 * 109.46755 * 175.10495 * 3 2 1 26 26 H 1.08998 * 109.47152 * 295.10510 * 3 2 1 27 27 H 0.97004 * 119.99514 * 359.83436 * 9 8 6 28 28 H 1.08998 * 109.54054 * 302.15595 * 14 4 2 29 29 H 1.09006 * 109.52378 * 303.05413 * 15 14 4 30 30 H 1.08998 * 109.52522 * 63.24584 * 15 14 4 31 31 H 1.08997 * 109.40653 * 297.49242 * 16 15 14 32 32 H 1.09005 * 109.48581 * 177.50373 * 16 15 14 33 33 H 1.09000 * 109.47566 * 301.17268 * 18 17 16 34 34 H 1.09004 * 109.47686 * 181.14217 * 18 17 16 35 35 H 1.09001 * 109.52023 * 182.48342 * 19 18 17 36 36 H 1.09010 * 109.57082 * 62.32973 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1268 -0.6483 1.2927 6 6 1.4442 -0.0820 2.4769 7 1 0.4652 -0.3819 2.8208 8 6 2.1485 0.8858 3.1610 9 7 3.3400 1.2520 2.7416 10 14 1.4101 1.6777 4.6833 11 1 0.6298 2.8777 4.2879 12 1 0.5148 0.7065 5.3617 13 1 2.4988 2.0785 5.6103 14 6 1.6298 -2.1941 1.1909 15 6 2.0967 -2.9068 2.4638 16 6 1.7538 -4.3954 2.3608 17 8 2.3660 -4.9459 1.1928 18 6 1.9300 -4.3499 -0.0306 19 6 2.2820 -2.8600 -0.0246 20 1 -0.3632 0.5415 0.8734 21 1 -0.3632 0.4856 -0.9057 22 1 -0.3633 -1.0271 0.0322 23 1 1.8934 -0.5138 -0.8900 24 1 1.6069 1.9810 0.8430 25 1 3.1265 1.4437 0.0877 26 1 1.7501 1.9304 -0.9306 27 1 3.7242 0.8395 1.9522 28 1 0.5454 -2.2675 1.1088 29 1 3.1750 -2.7894 2.5724 30 1 1.5935 -2.4747 3.3287 31 1 0.6723 -4.5141 2.2946 32 1 2.1233 -4.9156 3.2446 33 1 0.8508 -4.4680 -0.1280 34 1 2.4265 -4.8374 -0.8696 35 1 1.9111 -2.3944 -0.9377 36 1 3.3641 -2.7406 0.0316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -96.509333 kcal Electronic energy + Delta-G solvation = -15396.740227 eV Core-core repulsion = 13071.949591 eV Total energy + Delta-G solvation = -2324.790635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52963 -38.18744 -34.24722 -33.77442 -31.91305 -28.87196 -27.74966 -25.99863 -24.39621 -23.56308 -21.22074 -20.51105 -18.10317 -17.10664 -16.85156 -16.21832 -15.64874 -15.43867 -15.28992 -14.87384 -14.59594 -14.07530 -13.59434 -13.23352 -13.07257 -12.75977 -12.54119 -12.40975 -12.19782 -11.98591 -11.96045 -11.78729 -11.64375 -11.30866 -11.00985 -10.87483 -10.40047 -10.19072 -10.08978 -8.38767 -6.05722 1.54342 1.60812 1.76631 2.63449 3.01467 3.38208 3.92096 4.01260 4.16733 4.19985 4.34432 4.39400 4.47537 4.50537 4.61707 4.68799 4.80130 4.89016 4.91546 5.01862 5.06816 5.11531 5.16921 5.21490 5.35794 5.43029 5.49431 5.57198 5.69402 5.77671 5.89458 6.29599 6.33128 6.43135 6.88503 7.69307 8.99847 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.011688 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.425740 B = 2394.955753 C = 2926.547212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.118 4.118 4 C 0.037 3.963 5 H -0.003 1.003 6 C -0.566 4.566 7 H 0.040 0.960 8 C -0.025 4.025 9 N -0.945 5.945 10 Si 1.096 2.904 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.293 1.293 14 C -0.071 4.071 15 C -0.131 4.131 16 C 0.065 3.935 17 O -0.404 6.404 18 C 0.063 3.937 19 C -0.148 4.148 20 H 0.041 0.959 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.260 0.740 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -7.872 -4.697 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.106 4.106 3 C -0.175 4.175 4 C 0.018 3.982 5 H 0.016 0.984 6 C -0.605 4.605 7 H 0.058 0.942 8 C -0.223 4.223 9 N -0.585 5.585 10 Si 0.922 3.078 11 H -0.208 1.208 12 H -0.199 1.199 13 H -0.219 1.219 14 C -0.090 4.090 15 C -0.169 4.169 16 C -0.011 4.011 17 O -0.324 6.324 18 C -0.013 4.013 19 C -0.186 4.186 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.948 -6.903 -3.503 9.187 hybrid contribution -0.042 -0.416 -0.976 1.062 sum -4.991 -7.319 -4.479 9.927 Atomic orbital electron populations 1.21612 0.95222 1.00753 1.00231 1.21241 0.96290 0.95271 0.97782 1.21576 0.98895 0.97613 0.99437 1.18969 0.94329 0.91408 0.93519 0.98442 1.21963 1.03794 1.22927 1.11782 0.94210 1.26649 0.95320 0.96361 1.03989 1.70884 1.17285 1.43837 1.26491 0.83179 0.74945 0.76005 0.73674 1.20805 1.19857 1.21931 1.21131 0.98815 0.95649 0.93379 1.21987 0.99899 0.95583 0.99398 1.22669 0.97419 0.92878 0.88167 1.87829 1.68359 1.61016 1.15163 1.22697 0.99690 0.92267 0.86690 1.22287 1.00268 0.96711 0.99334 0.93964 0.93208 0.93021 0.93112 0.94490 0.95775 0.93403 0.92791 0.92123 0.94810 0.91755 0.92293 0.88147 0.92188 0.87397 0.90180 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.63 71.98 0.62 -3.87 16 2 C -0.09 -3.61 2.52 -10.79 -0.03 -3.64 16 3 C -0.12 -5.22 7.91 71.98 0.57 -4.65 16 4 C 0.04 1.70 1.22 -11.54 -0.01 1.69 16 5 H 0.00 -0.14 6.24 -2.39 -0.01 -0.16 16 6 C -0.57 -29.28 5.01 25.60 0.13 -29.16 16 7 H 0.04 2.07 7.76 -2.91 -0.02 2.05 16 8 C -0.02 -1.36 4.49 84.65 0.38 -0.98 16 9 N -0.95 -55.97 12.96 21.45 0.28 -55.69 16 10 Si 1.10 49.98 29.90 68.60 2.05 52.03 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 14 C -0.07 -2.78 1.65 -10.68 -0.02 -2.79 16 15 C -0.13 -5.11 5.08 30.69 0.16 -4.95 16 16 C 0.07 2.03 6.84 72.02 0.49 2.52 16 17 O -0.40 -13.10 10.77 -148.98 -1.60 -14.71 16 18 C 0.06 1.75 6.84 72.01 0.49 2.24 16 19 C -0.15 -4.92 5.04 30.68 0.15 -4.76 16 20 H 0.04 1.74 7.12 -2.39 -0.02 1.72 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.76 6.43 -2.39 -0.02 1.75 16 23 H 0.05 1.92 6.34 -2.39 -0.02 1.91 16 24 H 0.04 1.83 6.78 -2.39 -0.02 1.81 16 25 H 0.02 1.12 7.09 -2.39 -0.02 1.11 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.26 15.61 5.04 -92.71 -0.47 15.15 16 28 H 0.06 2.31 6.42 -2.39 -0.02 2.30 16 29 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 2.70 7.29 -2.39 -0.02 2.68 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 2.43 6.57 -2.39 -0.02 2.41 16 36 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -59.65 268.40 4.99 -54.66 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.33 Total: 12.07 kcal Atomic # 6 Polarization: -51.29 SS G_CDS: 2.94 Total: -48.36 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.69 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.60 Total: -14.71 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -59.65 4.99 -54.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.847 kcal (2) G-P(sol) polarization free energy of solvation -59.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds