Wall clock time and date at job start Mon Mar 30 2020 02:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47264 * 2 1 4 4 H 1.09007 * 109.47048 * 304.69235 * 3 2 1 5 5 C 1.50700 * 109.47226 * 184.69804 * 3 2 1 6 6 H 1.08001 * 119.99917 * 239.99835 * 5 3 2 7 7 C 1.37878 * 120.00284 * 59.99530 * 5 3 2 8 8 N 1.31512 * 119.99810 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00175 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46806 * 60.00460 * 9 7 5 11 11 H 1.48498 * 109.46826 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47169 * 300.00061 * 9 7 5 13 13 C 1.52996 * 109.47464 * 64.69568 * 3 2 1 14 14 H 1.09003 * 109.60718 * 305.97843 * 13 3 2 15 15 C 1.54202 * 109.53916 * 185.77368 * 13 3 2 16 16 C 1.46290 * 111.92432 * 162.55246 * 15 13 3 17 17 C 1.54118 * 112.19560 * 61.45442 * 16 15 13 18 18 O 1.40323 * 108.71221 * 280.44470 * 17 16 15 19 19 C 1.43990 * 116.58119 * 95.04092 * 18 17 16 20 20 C 1.50683 * 109.49161 * 66.25405 * 13 3 2 21 21 H 1.08997 * 109.47060 * 174.12841 * 1 2 3 22 22 H 1.08996 * 109.47041 * 294.12528 * 1 2 3 23 23 H 1.08998 * 109.46910 * 54.12687 * 1 2 3 24 24 H 1.09001 * 109.46923 * 239.99261 * 2 1 3 25 25 H 1.09006 * 109.47191 * 119.99982 * 2 1 3 26 26 H 0.97007 * 120.00026 * 180.02562 * 8 7 5 27 27 H 1.09000 * 108.97930 * 41.94923 * 15 13 3 28 28 H 1.09004 * 108.97694 * 283.15400 * 15 13 3 29 29 H 1.09000 * 108.93953 * 182.15568 * 16 15 13 30 30 H 1.08996 * 108.93534 * 300.75749 * 16 15 13 31 31 H 1.08997 * 109.60219 * 40.21863 * 17 16 15 32 32 H 1.09004 * 109.59540 * 160.52165 * 17 16 15 33 33 H 1.09001 * 108.69653 * 78.91144 * 19 18 17 34 34 H 1.08996 * 108.69330 * 197.01129 * 19 18 17 35 35 H 1.08995 * 108.92526 * 89.51574 * 20 13 3 36 36 H 1.08996 * 108.91267 * 331.00521 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6097 1.9800 -0.8450 5 6 3.5425 1.4440 -0.1164 6 1 4.1440 1.8900 0.6620 7 6 4.1494 0.8761 -1.2164 8 7 3.4171 0.3334 -2.1645 9 14 6.0119 0.8787 -1.3610 10 1 6.5987 0.1468 -0.2098 11 1 6.4110 0.2118 -2.6263 12 1 6.5063 2.2789 -1.3615 13 6 1.6288 2.1288 1.3040 14 1 0.5516 2.0358 1.4424 15 6 2.0142 3.6208 1.2453 16 6 1.3032 4.4086 2.2522 17 6 1.6307 3.9513 3.6871 18 8 0.8776 2.8033 3.9766 19 6 1.5265 1.5360 3.7618 20 6 2.3453 1.4813 2.4607 21 1 -0.3633 -1.0223 -0.1051 22 1 -0.3633 0.4200 0.9379 23 1 -0.3633 0.6022 -0.8327 24 1 1.8933 -0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 3.8441 -0.0665 -2.9383 27 1 1.7741 4.0103 0.2560 28 1 3.0870 3.7166 1.4129 29 1 1.5817 5.4567 2.1428 30 1 0.2306 4.3101 2.0857 31 1 2.6932 3.7206 3.7639 32 1 1.3772 4.7446 4.3904 33 1 2.1919 1.3373 4.6019 34 1 0.7662 0.7557 3.7271 35 1 3.2946 1.9928 2.6196 36 1 2.5454 0.4388 2.2134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:04 Heat of formation + Delta-G solvation = -88.985718 kcal Electronic energy + Delta-G solvation = -15341.813998 eV Core-core repulsion = 13017.349611 eV Total energy + Delta-G solvation = -2324.464387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53987 -37.69125 -34.83175 -33.76787 -32.44167 -29.39749 -27.33439 -26.22409 -24.50289 -22.28097 -21.50697 -20.23710 -18.12483 -17.37862 -17.11994 -16.43647 -15.86868 -15.42719 -14.98220 -14.55196 -14.38994 -13.87521 -13.60693 -13.45842 -13.05487 -12.91573 -12.61250 -12.54492 -12.16149 -12.08559 -11.84171 -11.71062 -11.36990 -11.23357 -11.00176 -10.59253 -10.47775 -10.29101 -10.18082 -8.00456 -6.11568 1.41927 1.42300 1.49098 2.46571 3.03239 3.26122 3.93772 4.04248 4.18865 4.26481 4.33005 4.50241 4.64186 4.67123 4.72727 4.75992 4.86164 4.88852 4.99338 5.15353 5.20371 5.28287 5.34772 5.38277 5.44537 5.55282 5.55679 5.64734 5.71525 5.79507 6.10359 6.27383 6.52084 6.56344 7.00781 7.55034 9.03336 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.010748 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.176373 B = 2604.619789 C = 2995.639836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.054 3.946 4 H -0.015 1.015 5 C -0.507 4.507 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.275 1.275 13 C -0.064 4.064 14 H 0.054 0.946 15 C -0.103 4.103 16 C -0.142 4.142 17 C 0.068 3.932 18 O -0.401 6.401 19 C 0.066 3.934 20 C -0.131 4.131 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.033 0.967 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.256 0.744 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 4.049 10.103 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.003 0.997 5 C -0.545 4.545 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.200 1.200 13 C -0.082 4.082 14 H 0.072 0.928 15 C -0.140 4.140 16 C -0.180 4.180 17 C -0.009 4.009 18 O -0.320 6.320 19 C -0.010 4.010 20 C -0.168 4.168 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.181 3.971 10.000 11.220 hybrid contribution 1.409 -0.208 -0.944 1.709 sum -1.772 3.764 9.056 9.966 Atomic orbital electron populations 1.21747 0.97046 1.00231 1.00457 1.21517 0.93684 0.99732 1.00495 1.18719 0.94081 0.92066 0.91568 0.99673 1.21501 0.92910 1.35611 1.04521 0.92699 1.25686 1.01435 0.95769 0.95984 1.70026 1.36047 1.39960 1.10023 0.85859 0.82010 0.78135 0.77114 1.19702 1.21620 1.20022 1.20784 0.98020 0.94173 0.95228 0.92758 1.20495 0.99716 0.95590 0.98249 1.21129 1.00904 1.00095 0.95864 1.22417 0.95521 0.87683 0.95298 1.87359 1.43529 1.14073 1.87068 1.23033 0.97067 0.85007 0.95875 1.21858 0.98533 1.02106 0.94315 0.93268 0.92627 0.94784 0.92570 0.94370 0.93503 0.94354 0.93448 0.90259 0.92176 0.93184 0.87991 0.92231 0.89352 0.93178 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.52 71.98 0.69 -4.70 16 2 C -0.12 -5.46 5.11 30.59 0.16 -5.30 16 3 C 0.05 2.64 1.50 -11.54 -0.02 2.63 16 4 H -0.01 -0.83 8.03 -2.38 -0.02 -0.85 16 5 C -0.51 -26.90 7.32 25.60 0.19 -26.72 16 6 H 0.05 2.85 6.27 -2.91 -0.02 2.83 16 7 C 0.01 0.48 5.29 84.66 0.45 0.93 16 8 N -0.92 -53.42 11.30 21.45 0.24 -53.18 16 9 Si 0.94 43.58 29.54 68.60 2.03 45.60 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C -0.06 -2.54 1.53 -11.14 -0.02 -2.55 16 14 H 0.05 2.13 6.11 -2.39 -0.01 2.12 16 15 C -0.10 -3.81 4.28 28.93 0.12 -3.69 16 16 C -0.14 -4.16 5.46 28.91 0.16 -4.00 16 17 C 0.07 1.81 6.38 72.36 0.46 2.27 16 18 O -0.40 -12.19 10.17 -143.46 -1.46 -13.65 16 19 C 0.07 1.95 6.67 72.26 0.48 2.43 16 20 C -0.13 -4.69 3.78 30.12 0.11 -4.58 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.05 1.97 6.72 -2.39 -0.02 1.95 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 3.04 5.96 -2.39 -0.01 3.03 16 25 H 0.04 1.72 6.17 -2.38 -0.01 1.70 16 26 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 27 H 0.04 1.53 7.93 -2.39 -0.02 1.51 16 28 H 0.05 1.82 7.02 -2.39 -0.02 1.80 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.05 1.34 6.98 -2.39 -0.02 1.32 16 32 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 1.84 6.22 -2.39 -0.01 1.82 16 36 H 0.07 2.68 5.68 -2.39 -0.01 2.66 16 Total: -1.00 -58.72 267.56 4.63 -54.09 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.04 Total: 10.42 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 2.78 Total: -43.29 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.24 Total: -53.18 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.46 Total: -13.65 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -58.72 4.63 -54.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.891 kcal (2) G-P(sol) polarization free energy of solvation -58.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds