Wall clock time and date at job start Mon Mar 30 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.08996 * 109.47538 * 304.87423 * 3 2 1 5 5 C 1.50701 * 109.47160 * 64.87681 * 3 2 1 6 6 H 1.08002 * 120.00165 * 64.64129 * 5 3 2 7 7 C 1.37877 * 119.99654 * 244.64301 * 5 3 2 8 8 N 1.31519 * 120.00270 * 8.87992 * 7 5 3 9 9 Si 1.86803 * 119.99838 * 188.87733 * 7 5 3 10 10 H 1.48498 * 109.47061 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47268 * 300.00346 * 9 7 5 12 12 H 1.48500 * 109.46751 * 60.00421 * 9 7 5 13 13 C 1.53002 * 109.47086 * 184.87263 * 3 2 1 14 14 H 1.09005 * 109.63450 * 306.01205 * 13 3 2 15 15 C 1.50288 * 109.63488 * 66.60998 * 13 3 2 16 16 C 1.54602 * 112.95849 * 211.78707 * 15 13 3 17 17 C 1.54356 * 111.45060 * 319.00092 * 16 15 13 18 18 O 1.39962 * 112.56950 * 319.31549 * 17 16 15 19 19 C 1.44219 * 112.36921 * 97.12489 * 18 17 16 20 20 C 1.45994 * 112.10448 * 277.40469 * 19 18 17 21 21 H 1.08996 * 109.47556 * 64.10599 * 1 2 3 22 22 H 1.09000 * 109.47008 * 184.11497 * 1 2 3 23 23 H 1.09004 * 109.46726 * 304.10794 * 1 2 3 24 24 H 1.08997 * 109.46576 * 240.00736 * 2 1 3 25 25 H 1.08993 * 109.47159 * 120.00289 * 2 1 3 26 26 H 0.97003 * 119.99587 * 355.80763 * 8 7 5 27 27 H 1.09003 * 108.78578 * 332.68425 * 15 13 3 28 28 H 1.09002 * 108.78691 * 90.89089 * 15 13 3 29 29 H 1.09000 * 109.08429 * 198.49612 * 16 15 13 30 30 H 1.08995 * 109.03002 * 79.47505 * 16 15 13 31 31 H 1.09003 * 108.86313 * 198.51509 * 17 16 15 32 32 H 1.09001 * 108.78067 * 80.05559 * 17 16 15 33 33 H 1.09000 * 108.95746 * 156.73027 * 19 18 17 34 34 H 1.08998 * 108.88703 * 38.03424 * 19 18 17 35 35 H 1.09000 * 109.02643 * 299.48774 * 20 19 18 36 36 H 1.08995 * 109.03236 * 180.64527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6071 1.9809 -0.8430 5 6 1.6386 2.1172 1.2864 6 1 2.0370 1.7667 2.2271 7 6 0.7629 3.1818 1.2623 8 7 0.1432 3.4985 0.1464 9 14 0.4565 4.1744 2.8149 10 1 -0.5185 5.2567 2.5262 11 1 -0.0890 3.2850 3.8715 12 1 1.7340 4.7712 3.2810 13 6 3.5650 1.4443 -0.1225 14 1 3.9960 0.8178 0.6585 15 6 3.9638 0.9200 -1.4734 16 6 5.3129 0.1653 -1.4531 17 6 6.3477 0.8828 -0.5604 18 8 6.3082 2.2744 -0.7042 19 6 5.5221 2.9104 0.3242 20 6 4.0947 2.8863 0.0184 21 1 -0.3634 0.4488 -0.9244 22 1 -0.3633 -1.0250 0.0737 23 1 -0.3633 0.5763 0.8509 24 1 1.8932 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 0.3474 3.0224 -0.6737 27 1 3.1879 0.2424 -1.8299 28 1 4.0406 1.7578 -2.1664 29 1 5.7016 0.1028 -2.4695 30 1 5.1507 -0.8426 -1.0712 31 1 7.3449 0.5295 -0.8230 32 1 6.1479 0.6303 0.4810 33 1 5.8448 3.9465 0.4267 34 1 5.6907 2.3923 1.2682 35 1 3.9223 3.4211 -0.9156 36 1 3.5512 3.3879 0.8191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:09 Heat of formation + Delta-G solvation = -90.784728 kcal Electronic energy + Delta-G solvation = -15321.136985 eV Core-core repulsion = 12996.594587 eV Total energy + Delta-G solvation = -2324.542398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66586 -37.88962 -34.71213 -33.48541 -33.17615 -29.23048 -27.56040 -25.67923 -24.69739 -22.17100 -21.90213 -20.57169 -18.59024 -17.39883 -16.94589 -16.06715 -15.83082 -15.61109 -15.41869 -14.66777 -14.32592 -14.04097 -13.90321 -13.40004 -13.25625 -12.61522 -12.60356 -12.43420 -12.17091 -11.99978 -11.81847 -11.77484 -11.44307 -11.27240 -10.89710 -10.86952 -10.50402 -10.35027 -10.16319 -8.44367 -6.09013 1.54932 1.60547 1.78855 2.62260 3.01733 3.32937 3.80761 4.03670 4.12439 4.26548 4.29100 4.33035 4.43362 4.58382 4.67514 4.68806 4.73661 4.80187 4.90138 4.99876 5.05270 5.09477 5.21083 5.27455 5.28601 5.44298 5.50792 5.55385 5.59504 5.74178 5.85383 6.29674 6.36783 6.38568 6.85133 7.65350 8.94667 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030412 B = 0.011453 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.476638 B = 2444.262541 C = 3082.481944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.023 3.977 4 H 0.011 0.989 5 C -0.575 4.575 6 H 0.037 0.963 7 C -0.022 4.022 8 N -0.942 5.942 9 Si 1.095 2.905 10 H -0.292 1.292 11 H -0.277 1.277 12 H -0.271 1.271 13 C -0.063 4.063 14 H 0.052 0.948 15 C -0.113 4.113 16 C -0.140 4.140 17 C 0.056 3.944 18 O -0.390 6.390 19 C 0.069 3.931 20 C -0.136 4.136 21 H 0.027 0.973 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.258 0.742 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -5.500 0.100 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.004 3.996 4 H 0.029 0.971 5 C -0.613 4.613 6 H 0.056 0.944 7 C -0.220 4.220 8 N -0.582 5.582 9 Si 0.920 3.080 10 H -0.218 1.218 11 H -0.202 1.202 12 H -0.196 1.196 13 C -0.081 4.081 14 H 0.071 0.929 15 C -0.150 4.150 16 C -0.178 4.178 17 C -0.022 4.022 18 O -0.309 6.309 19 C -0.007 4.007 20 C -0.174 4.174 21 H 0.046 0.954 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.912 -4.150 0.569 9.847 hybrid contribution 0.250 -1.177 -0.620 1.354 sum 9.161 -5.327 -0.051 10.598 Atomic orbital electron populations 1.21495 0.97010 0.99649 1.00204 1.21571 0.95295 0.98330 0.99080 1.19094 0.91710 0.92765 0.96010 0.97068 1.21943 1.29482 1.16616 0.93258 0.94419 1.26771 0.93177 0.97463 1.04628 1.70939 1.40562 1.45628 1.01024 0.83207 0.76839 0.75443 0.72548 1.21815 1.20236 1.19622 1.20775 0.97026 0.94591 0.95754 0.92922 1.21462 0.97056 0.99257 0.97252 1.22598 0.94699 0.99325 1.01158 1.22446 0.99280 0.81305 0.99146 1.87686 1.70408 1.19841 1.52936 1.21580 0.90510 0.98705 0.89883 1.21061 0.96532 0.98296 1.01475 0.95385 0.92571 0.94459 0.93260 0.93815 0.92990 0.92658 0.94458 0.91169 0.90362 0.88584 0.93081 0.89038 0.92279 0.94785 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 9.79 71.98 0.70 -4.70 16 2 C -0.11 -4.43 5.27 30.59 0.16 -4.27 16 3 C 0.02 1.10 1.57 -11.54 -0.02 1.08 16 4 H 0.01 0.60 5.77 -2.39 -0.01 0.59 16 5 C -0.57 -30.16 5.45 25.60 0.14 -30.02 16 6 H 0.04 2.00 7.83 -2.91 -0.02 1.97 16 7 C -0.02 -1.20 5.41 84.65 0.46 -0.74 16 8 N -0.94 -55.97 13.65 21.45 0.29 -55.68 16 9 Si 1.10 49.41 29.91 68.60 2.05 51.46 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 C -0.06 -2.53 1.44 -11.24 -0.02 -2.55 16 14 H 0.05 2.08 7.09 -2.38 -0.02 2.06 16 15 C -0.11 -4.00 4.91 30.26 0.15 -3.85 16 16 C -0.14 -3.87 6.27 31.60 0.20 -3.68 16 17 C 0.06 1.50 6.09 72.44 0.44 1.94 16 18 O -0.39 -12.69 10.35 -140.38 -1.45 -14.14 16 19 C 0.07 2.27 6.12 69.83 0.43 2.70 16 20 C -0.14 -5.53 4.83 28.87 0.14 -5.39 16 21 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.80 7.22 -2.39 -0.02 1.78 16 24 H 0.05 1.86 6.22 -2.39 -0.01 1.85 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.26 15.58 6.32 -92.71 -0.59 14.99 16 27 H 0.05 1.96 5.81 -2.39 -0.01 1.95 16 28 H 0.04 1.42 7.34 -2.39 -0.02 1.40 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.34 6.53 -2.39 -0.02 1.33 16 33 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.06 1.80 7.34 -2.39 -0.02 1.78 16 35 H 0.03 1.47 7.53 -2.39 -0.02 1.45 16 36 H 0.07 3.19 6.47 -2.39 -0.02 3.18 16 Total: -1.00 -59.56 270.84 4.89 -54.67 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.22 Total: 13.16 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 2.78 Total: -49.47 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.29 Total: -55.68 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.45 Total: -14.14 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Total: -59.56 4.89 -54.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.114 kcal (2) G-P(sol) polarization free energy of solvation -59.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds