Wall clock time and date at job start Mon Mar 30 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 H 1.09002 * 109.47161 * 305.59797 * 3 2 1 5 5 C 1.50701 * 109.46773 * 65.60061 * 3 2 1 6 6 H 1.08000 * 120.00455 * 63.97233 * 5 3 2 7 7 C 1.37882 * 119.99494 * 243.96544 * 5 3 2 8 8 N 1.31509 * 120.00099 * 353.26423 * 7 5 3 9 9 Si 1.86804 * 119.99556 * 173.26264 * 7 5 3 10 10 H 1.48498 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47090 * 120.00438 * 9 7 5 12 12 H 1.48501 * 109.46837 * 239.99912 * 9 7 5 13 13 C 1.52996 * 109.46867 * 185.59684 * 3 2 1 14 14 H 1.09003 * 109.60126 * 300.31012 * 13 3 2 15 15 C 1.54122 * 109.59859 * 180.02562 * 13 3 2 16 16 C 1.46287 * 112.19726 * 160.68386 * 15 13 3 17 17 C 1.54196 * 111.98805 * 61.41862 * 16 15 13 18 18 C 1.50620 * 109.06776 * 282.46470 * 17 16 15 19 19 C 1.53815 * 112.46713 * 90.33012 * 18 17 16 20 20 O 1.40321 * 109.59648 * 60.78028 * 13 3 2 21 21 H 1.08994 * 109.46606 * 301.45014 * 1 2 3 22 22 H 1.08998 * 109.46782 * 61.45295 * 1 2 3 23 23 H 1.08998 * 109.46965 * 181.45107 * 1 2 3 24 24 H 1.09000 * 109.46891 * 240.00531 * 2 1 3 25 25 H 1.08991 * 109.46934 * 120.00455 * 2 1 3 26 26 H 0.97005 * 119.99452 * 180.02562 * 8 7 5 27 27 H 1.08994 * 108.93620 * 281.39109 * 15 13 3 28 28 H 1.09007 * 108.93437 * 39.98629 * 15 13 3 29 29 H 1.09006 * 108.97474 * 182.06571 * 16 15 13 30 30 H 1.08996 * 108.97721 * 300.77376 * 16 15 13 31 31 H 1.09004 * 109.54285 * 42.34392 * 17 16 15 32 32 H 1.09004 * 109.53926 * 162.50707 * 17 16 15 33 33 H 1.09002 * 108.88639 * 211.10365 * 18 17 16 34 34 H 1.09002 * 108.88183 * 329.56238 * 18 17 16 35 35 H 1.09004 * 108.69323 * 78.90400 * 19 18 17 36 36 H 1.08994 * 108.70044 * 196.87532 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 1.6541 2.1117 1.2940 6 1 2.0551 1.7504 2.2294 7 6 0.7890 3.1853 1.2835 8 7 0.4049 3.7092 0.1400 9 14 0.1625 3.8956 2.8936 10 1 0.7403 3.1328 4.0292 11 1 0.5685 5.3202 2.9974 12 1 -1.3188 3.7989 2.9342 13 6 3.5635 1.4448 -0.1407 14 1 4.0084 0.8986 0.6911 15 6 4.0806 2.8967 -0.1404 16 6 5.5056 2.9759 0.1808 17 6 6.3724 2.2266 -0.8512 18 6 6.2904 0.7471 -0.5811 19 6 5.1438 0.0715 -1.3523 20 8 3.9251 0.8380 -1.3532 21 1 -0.3632 0.5362 0.8767 22 1 -0.3633 0.4911 -0.9027 23 1 -0.3633 -1.0273 0.0260 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 -0.2034 4.4648 0.1328 27 1 3.9154 3.3312 -1.1262 28 1 3.5195 3.4718 0.5963 29 1 5.8063 4.0234 0.2026 30 1 5.6716 2.5404 1.1661 31 1 6.0047 2.4347 -1.8560 32 1 7.4077 2.5571 -0.7662 33 1 7.2327 0.2826 -0.8716 34 1 6.1371 0.5914 0.4868 35 1 5.4601 -0.0833 -2.3839 36 1 4.9443 -0.9005 -0.9013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:51 Heat of formation + Delta-G solvation = -78.752900 kcal Electronic energy + Delta-G solvation = -15287.772090 eV Core-core repulsion = 12963.751431 eV Total energy + Delta-G solvation = -2324.020659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.83990 -34.89918 -34.10228 -31.70592 -31.32507 -27.65932 -25.54905 -24.70386 -22.82530 -20.14229 -19.70690 -19.00606 -16.81155 -15.53996 -15.29708 -14.53233 -14.36285 -13.68968 -13.17090 -12.89319 -12.82564 -12.36192 -12.18124 -11.65854 -11.46205 -11.00448 -10.94549 -10.73096 -10.65044 -10.33150 -10.18564 -10.03593 -9.88417 -9.64911 -9.35422 -8.88992 -8.70832 -8.64423 -8.19049 -5.99183 -3.99598 3.29020 3.38376 3.41757 4.40569 4.67746 5.09280 5.24708 5.34109 5.43966 5.66534 5.74986 5.89130 6.00768 6.17596 6.28002 6.30938 6.39901 6.42468 6.47737 6.59796 6.67099 6.77027 6.81566 7.03688 7.05947 7.22304 7.36088 7.49561 7.52080 7.75338 7.86439 7.96032 8.33709 8.62583 9.13103 9.60884 11.09371 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.011154 C = 0.009098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.002358 B = 2509.769260 C = 3076.928422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.881 3.119 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.109 3.891 14 H 0.033 0.967 15 C -0.135 4.135 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.151 4.151 19 C 0.065 3.935 20 O -0.383 6.383 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.021 0.979 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 -3.934 -1.081 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.013 3.987 4 H 0.093 0.907 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.709 3.291 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.052 3.948 14 H 0.051 0.949 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.189 4.189 19 C -0.012 4.012 20 O -0.303 6.303 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.978 -3.763 -1.307 8.917 hybrid contribution -0.111 0.427 1.189 1.268 sum 7.867 -3.336 -0.118 8.546 Atomic orbital electron populations 1.21539 0.97030 0.97824 1.02235 1.21521 0.95304 0.99566 0.97983 1.19138 0.87988 0.92225 0.99320 0.90721 1.20927 1.26837 1.13963 0.92257 0.93083 1.24917 0.96318 0.96292 0.95665 1.69938 1.34101 1.23757 1.24470 0.86718 0.78887 0.78928 0.84582 1.19770 1.21130 1.20979 1.22282 0.98554 0.90382 0.83587 0.94888 1.20929 0.94036 0.99349 1.02906 1.20668 0.97060 0.99280 0.98047 1.21308 0.98926 0.94542 1.00556 1.21912 0.98711 0.96940 1.01299 1.22716 0.85439 0.93406 0.99620 1.87470 1.38375 1.68230 1.36197 0.92068 0.93835 0.96025 0.94791 0.94862 0.93032 0.92765 0.89157 0.93169 0.93013 0.91517 0.92877 0.92012 0.92008 0.90922 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.76 37.16 0.36 -2.48 16 2 C -0.11 -2.40 5.32 -26.73 -0.14 -2.54 16 3 C 0.03 0.80 1.91 -91.77 -0.18 0.62 16 4 H 0.07 2.11 6.93 -51.93 -0.36 1.75 16 5 C -0.50 -13.22 5.80 -34.44 -0.20 -13.42 16 6 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 7 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 8 N -0.88 -24.91 12.62 55.43 0.70 -24.21 16 9 Si 0.88 20.89 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.11 2.41 1.73 -26.15 -0.05 2.37 16 14 H 0.03 0.72 7.00 -51.93 -0.36 0.36 16 15 C -0.13 -2.87 4.82 -29.34 -0.14 -3.01 16 16 C -0.11 -1.97 5.34 -29.30 -0.16 -2.12 16 17 C -0.12 -1.76 5.62 -27.30 -0.15 -1.91 16 18 C -0.15 -2.19 5.32 -27.50 -0.15 -2.34 16 19 C 0.07 1.06 6.67 37.58 0.25 1.31 16 20 O -0.38 -7.98 9.07 -33.68 -0.31 -8.29 16 21 H 0.06 1.44 7.35 -51.93 -0.38 1.06 16 22 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.74 7.55 -51.93 -0.39 0.35 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 28 H 0.09 2.16 6.65 -51.92 -0.35 1.82 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 31 H 0.07 1.07 7.83 -51.93 -0.41 0.66 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.93 6.84 -51.93 -0.36 0.58 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -27.38 277.40 -7.44 -34.82 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.35 Total: -0.63 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.64 Total: -21.73 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.70 Total: -24.21 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.31 Total: -8.29 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.38 -7.44 -34.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.934 kcal (2) G-P(sol) polarization free energy of solvation -27.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds