Wall clock time and date at job start Mon Mar 30 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 H 1.09002 * 109.47161 * 305.59797 * 3 2 1 5 5 C 1.50701 * 109.46773 * 65.60061 * 3 2 1 6 6 H 1.08000 * 120.00455 * 63.97233 * 5 3 2 7 7 C 1.37882 * 119.99494 * 243.96544 * 5 3 2 8 8 N 1.31509 * 120.00099 * 353.26423 * 7 5 3 9 9 Si 1.86804 * 119.99556 * 173.26264 * 7 5 3 10 10 H 1.48498 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47090 * 120.00438 * 9 7 5 12 12 H 1.48501 * 109.46837 * 239.99912 * 9 7 5 13 13 C 1.52996 * 109.46867 * 185.59684 * 3 2 1 14 14 H 1.09003 * 109.60126 * 300.31012 * 13 3 2 15 15 C 1.54122 * 109.59859 * 180.02562 * 13 3 2 16 16 C 1.46287 * 112.19726 * 160.68386 * 15 13 3 17 17 C 1.54196 * 111.98805 * 61.41862 * 16 15 13 18 18 C 1.50620 * 109.06776 * 282.46470 * 17 16 15 19 19 C 1.53815 * 112.46713 * 90.33012 * 18 17 16 20 20 O 1.40321 * 109.59648 * 60.78028 * 13 3 2 21 21 H 1.08994 * 109.46606 * 301.45014 * 1 2 3 22 22 H 1.08998 * 109.46782 * 61.45295 * 1 2 3 23 23 H 1.08998 * 109.46965 * 181.45107 * 1 2 3 24 24 H 1.09000 * 109.46891 * 240.00531 * 2 1 3 25 25 H 1.08991 * 109.46934 * 120.00455 * 2 1 3 26 26 H 0.97005 * 119.99452 * 180.02562 * 8 7 5 27 27 H 1.08994 * 108.93620 * 281.39109 * 15 13 3 28 28 H 1.09007 * 108.93437 * 39.98629 * 15 13 3 29 29 H 1.09006 * 108.97474 * 182.06571 * 16 15 13 30 30 H 1.08996 * 108.97721 * 300.77376 * 16 15 13 31 31 H 1.09004 * 109.54285 * 42.34392 * 17 16 15 32 32 H 1.09004 * 109.53926 * 162.50707 * 17 16 15 33 33 H 1.09002 * 108.88639 * 211.10365 * 18 17 16 34 34 H 1.09002 * 108.88183 * 329.56238 * 18 17 16 35 35 H 1.09004 * 108.69323 * 78.90400 * 19 18 17 36 36 H 1.08994 * 108.70044 * 196.87532 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 1.6541 2.1117 1.2940 6 1 2.0551 1.7504 2.2294 7 6 0.7890 3.1853 1.2835 8 7 0.4049 3.7092 0.1400 9 14 0.1625 3.8956 2.8936 10 1 0.7403 3.1328 4.0292 11 1 0.5685 5.3202 2.9974 12 1 -1.3188 3.7989 2.9342 13 6 3.5635 1.4448 -0.1407 14 1 4.0084 0.8986 0.6911 15 6 4.0806 2.8967 -0.1404 16 6 5.5056 2.9759 0.1808 17 6 6.3724 2.2266 -0.8512 18 6 6.2904 0.7471 -0.5811 19 6 5.1438 0.0715 -1.3523 20 8 3.9251 0.8380 -1.3532 21 1 -0.3632 0.5362 0.8767 22 1 -0.3633 0.4911 -0.9027 23 1 -0.3633 -1.0273 0.0260 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 -0.2034 4.4648 0.1328 27 1 3.9154 3.3312 -1.1262 28 1 3.5195 3.4718 0.5963 29 1 5.8063 4.0234 0.2026 30 1 5.6716 2.5404 1.1661 31 1 6.0047 2.4347 -1.8560 32 1 7.4077 2.5571 -0.7662 33 1 7.2327 0.2826 -0.8716 34 1 6.1371 0.5914 0.4868 35 1 5.4601 -0.0833 -2.3839 36 1 4.9443 -0.9005 -0.9013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:51 Heat of formation + Delta-G solvation = -93.351196 kcal Electronic energy + Delta-G solvation = -15288.405119 eV Core-core repulsion = 12963.751431 eV Total energy + Delta-G solvation = -2324.653688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39497 -36.67224 -35.61457 -33.61986 -32.92712 -29.41076 -26.97622 -26.59991 -24.51688 -21.66931 -21.31299 -20.68749 -18.72111 -17.24435 -16.82546 -16.30012 -15.89536 -15.28960 -14.88546 -14.46661 -14.38172 -14.06322 -13.78320 -13.26090 -13.10242 -12.83294 -12.79290 -12.43721 -12.22659 -12.07301 -11.80397 -11.55374 -11.44372 -11.23266 -10.97496 -10.82459 -10.69384 -10.56539 -9.92297 -8.06221 -6.11385 1.39341 1.43247 1.52734 2.44495 3.09443 3.34896 3.87045 4.05140 4.10062 4.23473 4.38272 4.46810 4.57424 4.66291 4.72816 4.80327 4.81646 4.96983 5.02936 5.08071 5.19332 5.27988 5.32725 5.33717 5.40316 5.51330 5.58381 5.65350 5.67799 5.73060 5.92639 5.96942 6.39765 6.90733 7.05694 7.51307 9.02817 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.011154 C = 0.009098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.002358 B = 2509.769260 C = 3076.928422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.027 3.973 4 H 0.033 0.967 5 C -0.503 4.503 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.918 5.918 9 Si 0.937 3.063 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.121 3.879 14 H 0.036 0.964 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.148 4.148 19 C 0.053 3.947 20 O -0.406 6.406 21 H 0.040 0.960 22 H 0.027 0.973 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.259 0.741 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -5.011 -0.526 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.139 4.139 3 C 0.008 3.992 4 H 0.051 0.949 5 C -0.541 4.541 6 H 0.065 0.935 7 C -0.173 4.173 8 N -0.558 5.558 9 Si 0.764 3.236 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.063 3.937 14 H 0.054 0.946 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.185 4.185 19 C -0.023 4.023 20 O -0.326 6.326 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.642 -4.854 -0.745 10.821 hybrid contribution -0.592 0.706 0.953 1.325 sum 9.050 -4.148 0.208 9.957 Atomic orbital electron populations 1.21460 0.96636 0.99436 1.00432 1.21447 0.95667 0.98174 0.98653 1.19094 0.90124 0.92903 0.97052 0.94895 1.21085 1.26517 1.13869 0.92618 0.93482 1.25538 0.96666 0.96792 0.98268 1.70071 1.34982 1.24368 1.26340 0.85823 0.78223 0.78215 0.81358 1.18996 1.20976 1.20857 1.21904 0.96569 0.90858 0.84319 0.94582 1.20803 0.96479 0.98403 1.00478 1.20640 0.94705 1.00637 0.99171 1.21278 0.99918 0.94789 0.98837 1.21901 0.99483 0.96472 1.00683 1.23053 0.84367 0.93255 1.01585 1.87411 1.41056 1.68785 1.35314 0.94132 0.95339 0.92614 0.93951 0.94052 0.93223 0.94966 0.92597 0.92160 0.92488 0.92649 0.89787 0.88452 0.92533 0.88769 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 9.76 71.99 0.70 -4.65 16 2 C -0.10 -4.57 5.32 30.60 0.16 -4.41 16 3 C 0.03 1.38 1.91 -11.54 -0.02 1.36 16 4 H 0.03 1.94 6.93 -2.39 -0.02 1.92 16 5 C -0.50 -26.94 5.80 25.60 0.15 -26.80 16 6 H 0.05 2.52 7.82 -2.91 -0.02 2.49 16 7 C 0.03 1.44 5.43 84.66 0.46 1.90 16 8 N -0.92 -53.43 12.62 21.45 0.27 -53.16 16 9 Si 0.94 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.12 5.36 1.73 30.97 0.05 5.41 16 14 H 0.04 1.55 7.00 -2.39 -0.02 1.54 16 15 C -0.12 -5.37 4.82 28.91 0.14 -5.23 16 16 C -0.11 -3.82 5.34 28.93 0.15 -3.67 16 17 C -0.11 -3.04 5.62 30.23 0.17 -2.87 16 18 C -0.15 -3.78 5.32 30.10 0.16 -3.62 16 19 C 0.05 1.60 6.67 72.26 0.48 2.08 16 20 O -0.41 -16.63 9.07 -143.44 -1.30 -17.94 16 21 H 0.04 1.91 7.35 -2.39 -0.02 1.89 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 24 H 0.04 1.81 7.55 -2.39 -0.02 1.79 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 27 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.06 2.77 6.65 -2.38 -0.02 2.75 16 29 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.06 1.85 7.60 -2.39 -0.02 1.83 16 31 H 0.05 1.66 7.83 -2.38 -0.02 1.64 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.52 6.84 -2.39 -0.02 1.51 16 35 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -59.86 277.40 4.62 -55.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.01 Total: 10.97 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 2.61 Total: -40.49 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.27 Total: -53.16 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.30 Total: -17.94 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -59.86 4.62 -55.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.117 kcal (2) G-P(sol) polarization free energy of solvation -59.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds