Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 H 1.09002 * 109.47167 * 305.66039 * 3 2 1 5 5 C 1.50697 * 109.47118 * 65.66015 * 3 2 1 6 6 H 1.07996 * 120.00151 * 62.55586 * 5 3 2 7 7 C 1.37878 * 119.99833 * 242.55144 * 5 3 2 8 8 N 1.31514 * 120.00146 * 353.15930 * 7 5 3 9 9 Si 1.86797 * 119.99977 * 173.15162 * 7 5 3 10 10 H 1.48509 * 109.46923 * 90.00174 * 9 7 5 11 11 H 1.48501 * 109.47440 * 210.00216 * 9 7 5 12 12 H 1.48502 * 109.47413 * 330.00552 * 9 7 5 13 13 C 1.53000 * 109.47147 * 185.66162 * 3 2 1 14 14 H 1.08999 * 108.93976 * 59.99648 * 13 3 2 15 15 C 1.45987 * 108.95830 * 178.75484 * 13 3 2 16 16 C 1.54265 * 111.73522 * 180.73721 * 15 13 3 17 17 C 1.50289 * 108.48268 * 281.93778 * 16 15 13 18 18 C 1.54610 * 112.94285 * 92.09747 * 17 16 15 19 19 C 1.54348 * 111.45339 * 319.00375 * 18 17 16 20 20 O 1.40037 * 112.50357 * 319.31556 * 19 18 17 21 21 H 1.09002 * 109.46966 * 181.32465 * 1 2 3 22 22 H 1.08996 * 109.47028 * 301.32612 * 1 2 3 23 23 H 1.08998 * 109.46899 * 61.32664 * 1 2 3 24 24 H 1.09002 * 109.46788 * 239.99977 * 2 1 3 25 25 H 1.09001 * 109.46700 * 120.00371 * 2 1 3 26 26 H 0.97006 * 120.00117 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.02528 * 301.31404 * 15 13 3 28 28 H 1.08998 * 109.02592 * 60.22896 * 15 13 3 29 29 H 1.08996 * 109.63956 * 41.64241 * 16 15 13 30 30 H 1.08997 * 109.63268 * 162.04668 * 16 15 13 31 31 H 1.09000 * 108.79315 * 212.99019 * 17 16 15 32 32 H 1.08996 * 108.78872 * 331.20366 * 17 16 15 33 33 H 1.08997 * 109.08145 * 79.51714 * 18 17 16 34 34 H 1.09003 * 109.08037 * 198.50110 * 18 17 16 35 35 H 1.09009 * 108.85871 * 80.11480 * 19 18 17 36 36 H 1.09001 * 108.86571 * 198.61407 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 1.6554 2.1112 1.2945 6 1 2.0393 1.7354 2.2314 7 6 0.8135 3.2031 1.2828 8 7 0.4538 3.7438 0.1392 9 14 0.1837 3.9142 2.8912 10 1 1.1245 4.9573 3.3732 11 1 -1.1559 4.5175 2.6749 12 1 0.0820 2.8331 3.9043 13 6 3.5634 1.4448 -0.1423 14 1 3.8318 0.9594 -1.0806 15 6 4.0350 2.8261 -0.1709 16 6 5.5673 2.9034 -0.3317 17 6 6.2014 2.6114 0.9992 18 6 6.5391 1.1149 1.1907 19 6 5.4133 0.2084 0.6492 20 8 4.1373 0.6999 0.9515 21 1 -0.3633 -1.0274 0.0238 22 1 -0.3633 0.5343 0.8778 23 1 -0.3633 0.4931 -0.9016 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 -0.1389 4.5117 0.1309 27 1 3.5635 3.3453 -1.0052 28 1 3.7511 3.3178 0.7595 29 1 5.8965 2.1661 -1.0639 30 1 5.8507 3.9018 -0.6645 31 1 7.1196 3.1923 1.0857 32 1 5.5173 2.9208 1.7894 33 1 7.4648 0.8880 0.6618 34 1 6.6784 0.9140 2.2529 35 1 5.5141 0.1298 -0.4334 36 1 5.5199 -0.7848 1.0855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446660.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -88.112915 kcal Electronic energy + Delta-G solvation = -15372.981939 eV Core-core repulsion = 13048.555399 eV Total energy + Delta-G solvation = -2324.426539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.51807 -36.70401 -35.34946 -33.64339 -32.89389 -29.17996 -27.38034 -26.26916 -24.48836 -21.86640 -21.26344 -20.72813 -18.62267 -17.00160 -16.84797 -16.33970 -15.66861 -15.36857 -15.06870 -14.30147 -14.17802 -14.02820 -13.64957 -13.41584 -13.20304 -12.84422 -12.72113 -12.43922 -12.21966 -12.06940 -11.80544 -11.52229 -11.37310 -11.16466 -10.91717 -10.83272 -10.70665 -10.39506 -10.05760 -8.02864 -6.02266 1.38938 1.42103 1.51113 2.48543 3.22883 3.31186 3.90772 4.06826 4.18364 4.36094 4.39139 4.45036 4.58505 4.65229 4.69632 4.76473 4.81988 4.94180 5.05593 5.12608 5.20264 5.25200 5.33870 5.36383 5.38587 5.48051 5.56969 5.64133 5.73556 5.81918 5.93468 6.00866 6.47597 6.84664 7.09496 7.58771 9.06135 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.012019 C = 0.010064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.224492 B = 2329.010678 C = 2781.465990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C 0.023 3.977 4 H 0.047 0.953 5 C -0.481 4.481 6 H 0.038 0.962 7 C 0.023 3.977 8 N -0.923 5.923 9 Si 0.929 3.071 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.111 3.889 14 H 0.037 0.963 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.139 4.139 19 C 0.047 3.953 20 O -0.376 6.376 21 H 0.054 0.946 22 H 0.036 0.964 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.257 0.743 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 -4.637 -1.228 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 C 0.004 3.996 4 H 0.065 0.935 5 C -0.519 4.519 6 H 0.056 0.944 7 C -0.175 4.175 8 N -0.564 5.564 9 Si 0.757 3.243 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.054 3.946 14 H 0.055 0.945 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.176 4.176 19 C -0.031 4.031 20 O -0.294 6.294 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.394 -4.519 -1.111 10.484 hybrid contribution -0.567 0.817 0.672 1.200 sum 8.827 -3.702 -0.439 9.582 Atomic orbital electron populations 1.21487 0.96763 0.99454 1.00492 1.21429 0.95384 0.98057 0.98911 1.19222 0.89741 0.93063 0.97542 0.93466 1.20991 1.26250 1.11705 0.92997 0.94359 1.25442 0.97001 0.97184 0.97860 1.69983 1.36952 1.23635 1.25835 0.85999 0.77739 0.78595 0.81996 1.20749 1.21119 1.19837 1.21121 0.95764 0.90986 0.86690 0.94507 1.20893 0.95535 0.98097 1.01545 1.21322 0.94223 1.01712 0.97845 1.21266 1.00123 0.96762 0.97055 1.22588 0.98723 0.94578 1.01758 1.22461 0.84200 0.96830 0.99560 1.87875 1.30007 1.71000 1.40566 0.92702 0.94509 0.94817 0.93981 0.93841 0.93384 0.93588 0.93211 0.91294 0.91409 0.91053 0.94464 0.89483 0.92005 0.93198 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 9.76 71.98 0.70 -4.62 16 2 C -0.10 -4.38 5.14 30.59 0.16 -4.22 16 3 C 0.02 1.13 1.93 -11.54 -0.02 1.11 16 4 H 0.05 2.60 6.93 -2.39 -0.02 2.58 16 5 C -0.48 -26.27 5.63 25.60 0.14 -26.13 16 6 H 0.04 2.20 7.78 -2.91 -0.02 2.18 16 7 C 0.02 1.26 5.45 84.65 0.46 1.72 16 8 N -0.92 -53.13 12.62 21.45 0.27 -52.86 16 9 Si 0.93 44.70 29.54 68.60 2.03 46.73 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 13 C 0.11 4.75 1.81 28.44 0.05 4.80 16 14 H 0.04 1.45 7.34 -2.39 -0.02 1.43 16 15 C -0.12 -5.17 4.54 28.87 0.13 -5.04 16 16 C -0.11 -3.63 5.61 30.15 0.17 -3.46 16 17 C -0.11 -3.46 5.46 30.27 0.17 -3.29 16 18 C -0.14 -3.70 6.26 31.60 0.20 -3.50 16 19 C 0.05 1.46 6.09 72.44 0.44 1.90 16 20 O -0.38 -15.50 8.93 -141.07 -1.26 -16.76 16 21 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.04 1.73 7.36 -2.39 -0.02 1.71 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.93 7.80 -2.39 -0.02 1.91 16 26 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.44 6.43 -2.39 -0.02 2.43 16 29 H 0.07 1.97 7.07 -2.39 -0.02 1.95 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.35 7.33 -2.39 -0.02 1.33 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.41 6.54 -2.38 -0.02 1.40 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -59.32 276.28 4.65 -54.67 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.02 Total: 8.96 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 2.60 Total: -40.75 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.27 Total: -52.86 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -1.26 Total: -16.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -59.32 4.65 -54.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446660.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.443 kcal (2) G-P(sol) polarization free energy of solvation -59.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds