Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 H 1.09004 * 109.85174 * 180.95245 * 13 2 1 15 15 C 1.51075 * 109.85897 * 301.97933 * 13 2 1 16 16 C 1.53467 * 111.29441 * 213.96482 * 15 13 2 17 17 C 1.54140 * 111.66484 * 319.24457 * 16 15 13 18 18 C 1.50979 * 112.81209 * 318.38716 * 17 16 15 19 19 C 1.54625 * 109.21520 * 92.32711 * 18 17 16 20 20 O 1.36325 * 111.08862 * 285.35157 * 19 18 17 21 21 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 22 22 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 24 24 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 25 25 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.08992 * 109.11652 * 334.43508 * 15 13 2 28 28 H 1.09000 * 109.11365 * 93.50490 * 15 13 2 29 29 H 1.09000 * 109.04161 * 198.67759 * 16 15 13 30 30 H 1.09006 * 109.03981 * 79.80460 * 16 15 13 31 31 H 1.09000 * 108.81865 * 197.52947 * 17 16 15 32 32 H 1.09002 * 108.73370 * 79.18453 * 17 16 15 33 33 H 1.09004 * 109.51386 * 332.40875 * 18 17 16 34 34 H 1.08994 * 109.51688 * 212.25284 * 18 17 16 35 35 H 1.09000 * 109.15208 * 164.93341 * 19 18 17 36 36 H 1.09001 * 109.10827 * 45.73605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 1 3.1299 -0.7101 1.2640 15 6 1.5016 -0.0448 2.4881 16 6 2.5148 -0.1021 3.6393 17 6 3.2170 -1.4723 3.7117 18 6 2.2713 -2.6273 3.4856 19 6 2.2651 -2.9933 1.9833 20 8 1.5667 -2.0747 1.2575 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6054 -1.7197 -1.2952 25 1 3.1263 -0.7993 -1.2057 26 1 2.9313 -1.8368 -4.7314 27 1 1.2809 0.9976 2.2583 28 1 0.5827 -0.5435 2.7963 29 1 1.9953 0.0815 4.5798 30 1 3.2652 0.6747 3.4916 31 1 3.6756 -1.5809 4.6946 32 1 3.9995 -1.5052 2.9537 33 1 1.2660 -2.3407 3.7946 34 1 2.6009 -3.4873 4.0685 35 1 1.8062 -3.9738 1.8560 36 1 3.2924 -3.0296 1.6206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -77.807124 kcal Electronic energy + Delta-G solvation = -14968.181669 eV Core-core repulsion = 12644.202023 eV Total energy + Delta-G solvation = -2323.979647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60974 -35.13783 -34.52761 -32.49573 -30.53633 -27.05060 -25.96267 -25.39050 -23.37993 -21.42405 -19.52988 -18.92074 -16.49004 -15.96280 -15.36871 -15.08315 -14.63923 -14.38065 -13.51353 -13.05938 -12.88247 -12.52652 -12.28644 -11.87829 -11.62465 -11.29391 -11.01493 -10.82070 -10.76453 -10.62690 -10.43040 -10.19292 -10.03100 -9.94058 -9.54110 -9.19389 -8.92142 -8.66432 -8.25281 -5.90571 -3.91481 3.35743 3.43136 3.47070 4.27663 4.52809 4.88809 4.99760 5.07275 5.26796 5.36759 5.45004 5.51413 5.72100 5.81297 5.89336 5.94989 6.00797 6.13512 6.19469 6.23045 6.30984 6.32111 6.36863 6.47538 6.64818 6.72934 7.04183 7.25578 7.30528 7.79212 7.98416 8.14247 8.23623 8.53889 9.15942 9.71146 11.20813 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.051669 B = 0.007397 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.783121 B = 3784.500502 C = 4016.887901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.065 0.935 4 C 0.031 3.969 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.105 3.895 14 H 0.054 0.946 15 C -0.145 4.145 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.163 4.163 19 C 0.078 3.922 20 O -0.368 6.368 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.029 0.971 24 H 0.026 0.974 25 H 0.009 0.991 26 H 0.258 0.742 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 0.237 14.019 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.049 3.951 14 H 0.072 0.928 15 C -0.183 4.183 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.201 4.201 19 C 0.000 4.000 20 O -0.286 6.286 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.600 0.089 13.794 13.807 hybrid contribution 0.157 0.494 -0.642 0.825 sum -0.443 0.583 13.152 13.172 Atomic orbital electron populations 1.21645 0.95806 1.01432 0.99646 1.21348 0.96119 0.98094 0.94364 0.91624 1.19069 0.95619 0.96090 0.89826 1.21334 1.34357 1.08245 0.91225 0.92644 1.25018 0.95427 0.95107 0.99013 1.69991 1.39177 1.21272 1.23105 0.86605 0.78184 0.80158 0.83451 1.19811 1.21182 1.21115 1.22093 0.97193 0.81036 0.94815 0.92784 1.22068 0.99205 1.01629 0.95380 1.21878 0.98521 0.96718 0.98513 1.21455 0.98687 0.94623 1.01328 1.22333 1.00596 0.98078 0.99109 1.21679 0.96433 0.92654 0.89262 1.86396 1.54195 1.18421 1.69634 0.92406 0.92807 0.95182 0.95586 0.97261 0.93257 0.91254 0.91148 0.92593 0.92277 0.92614 0.92142 0.91158 0.91778 0.89766 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.58 37.16 0.32 -2.23 16 2 C -0.08 -1.71 2.04 -90.62 -0.18 -1.89 16 3 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 4 C 0.03 0.82 4.24 -27.88 -0.12 0.70 16 5 C -0.51 -14.68 8.41 -34.44 -0.29 -14.97 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.11 1.90 2.01 -27.70 -0.06 1.84 16 14 H 0.05 0.99 6.68 -51.93 -0.35 0.64 16 15 C -0.15 -2.14 3.84 -27.46 -0.11 -2.24 16 16 C -0.12 -1.47 5.93 -25.89 -0.15 -1.63 16 17 C -0.12 -1.51 5.31 -27.15 -0.14 -1.65 16 18 C -0.16 -2.04 5.67 -26.89 -0.15 -2.19 16 19 C 0.08 1.20 6.39 38.01 0.24 1.44 16 20 O -0.37 -6.92 8.36 -20.78 -0.17 -7.09 16 21 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 22 H 0.05 1.11 7.70 -51.93 -0.40 0.71 16 23 H 0.03 0.50 6.96 -51.93 -0.36 0.14 16 24 H 0.03 0.75 7.85 -51.93 -0.41 0.34 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.07 0.99 7.39 -51.93 -0.38 0.61 16 28 H 0.07 1.05 7.31 -51.93 -0.38 0.67 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.79 6.60 -51.93 -0.34 0.45 16 33 H 0.07 0.90 7.16 -51.93 -0.37 0.53 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 275.01 15.07 4.14 4.14 Total: -1.00 -30.41 275.01 -7.27 -37.68 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.22 Total: -3.67 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.74 Total: -21.31 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.17 Total: -7.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.41 -7.27 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.128 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds