Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 H 1.09004 * 109.85174 * 180.95245 * 13 2 1 15 15 C 1.51075 * 109.85897 * 301.97933 * 13 2 1 16 16 C 1.53467 * 111.29441 * 213.96482 * 15 13 2 17 17 C 1.54140 * 111.66484 * 319.24457 * 16 15 13 18 18 C 1.50979 * 112.81209 * 318.38716 * 17 16 15 19 19 C 1.54625 * 109.21520 * 92.32711 * 18 17 16 20 20 O 1.36325 * 111.08862 * 285.35157 * 19 18 17 21 21 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 22 22 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 24 24 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 25 25 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.08992 * 109.11652 * 334.43508 * 15 13 2 28 28 H 1.09000 * 109.11365 * 93.50490 * 15 13 2 29 29 H 1.09000 * 109.04161 * 198.67759 * 16 15 13 30 30 H 1.09006 * 109.03981 * 79.80460 * 16 15 13 31 31 H 1.09000 * 108.81865 * 197.52947 * 17 16 15 32 32 H 1.09002 * 108.73370 * 79.18453 * 17 16 15 33 33 H 1.09004 * 109.51386 * 332.40875 * 18 17 16 34 34 H 1.08994 * 109.51688 * 212.25284 * 18 17 16 35 35 H 1.09000 * 109.15208 * 164.93341 * 19 18 17 36 36 H 1.09001 * 109.10827 * 45.73605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 1 3.1299 -0.7101 1.2640 15 6 1.5016 -0.0448 2.4881 16 6 2.5148 -0.1021 3.6393 17 6 3.2170 -1.4723 3.7117 18 6 2.2713 -2.6273 3.4856 19 6 2.2651 -2.9933 1.9833 20 8 1.5667 -2.0747 1.2575 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6054 -1.7197 -1.2952 25 1 3.1263 -0.7993 -1.2057 26 1 2.9313 -1.8368 -4.7314 27 1 1.2809 0.9976 2.2583 28 1 0.5827 -0.5435 2.7963 29 1 1.9953 0.0815 4.5798 30 1 3.2652 0.6747 3.4916 31 1 3.6756 -1.5809 4.6946 32 1 3.9995 -1.5052 2.9537 33 1 1.2660 -2.3407 3.7946 34 1 2.6009 -3.4873 4.0685 35 1 1.8062 -3.9738 1.8560 36 1 3.2924 -3.0296 1.6206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -95.146868 kcal Electronic energy + Delta-G solvation = -14968.933577 eV Core-core repulsion = 12644.202023 eV Total energy + Delta-G solvation = -2324.731555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93111 -36.84941 -35.67598 -34.50995 -32.02458 -28.92910 -27.30251 -26.77179 -25.17690 -22.85822 -20.92790 -20.29650 -18.51856 -17.47543 -16.78202 -16.46337 -16.25243 -15.73497 -14.95689 -14.60739 -14.45191 -14.22971 -13.57948 -13.34032 -13.11524 -12.92873 -12.72155 -12.62783 -12.26874 -12.19442 -11.81167 -11.67339 -11.53846 -11.34374 -11.03265 -10.94291 -10.82951 -10.52421 -10.13390 -8.15457 -6.25336 1.40038 1.40590 1.53802 2.42984 2.95057 3.17379 3.81442 3.95457 4.04564 4.08231 4.17826 4.28817 4.46123 4.52832 4.56834 4.73102 4.77114 4.87750 4.93738 5.01879 5.09371 5.15291 5.24172 5.27622 5.32258 5.39577 5.46616 5.47542 5.54730 5.58020 5.84914 5.93943 6.30861 6.88000 6.93776 7.42756 8.96803 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.051669 B = 0.007397 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.783121 B = 3784.500502 C = 4016.887901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 H 0.072 0.928 4 C 0.041 3.959 5 C -0.531 4.531 6 H 0.063 0.937 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.109 3.891 14 H 0.044 0.956 15 C -0.138 4.138 16 C -0.116 4.116 17 C -0.126 4.126 18 C -0.152 4.152 19 C 0.067 3.933 20 O -0.395 6.395 21 H 0.042 0.958 22 H 0.038 0.962 23 H 0.066 0.934 24 H -0.010 1.010 25 H -0.023 1.023 26 H 0.261 0.739 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 1.478 15.370 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.098 4.098 3 H 0.090 0.910 4 C 0.004 3.996 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.052 3.948 14 H 0.062 0.938 15 C -0.175 4.175 16 C -0.154 4.154 17 C -0.163 4.163 18 C -0.190 4.190 19 C -0.011 4.011 20 O -0.314 6.314 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.008 0.992 25 H -0.005 1.005 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -1.311 1.336 15.163 15.278 hybrid contribution 0.410 0.036 -1.071 1.147 sum -0.901 1.372 14.092 14.188 Atomic orbital electron populations 1.21532 0.94572 1.00774 1.00664 1.21259 0.97100 0.98024 0.93368 0.91010 1.18887 0.93358 0.94818 0.92531 1.21748 1.34278 1.08620 0.92215 0.91872 1.26004 0.95278 0.96147 1.02776 1.70139 1.40380 1.23100 1.24116 0.85426 0.78062 0.78886 0.78839 1.18360 1.20493 1.20607 1.21960 0.96566 0.81211 0.95021 0.93816 1.21962 0.99820 1.01404 0.94358 1.21873 0.98200 0.96957 0.98325 1.21489 0.98247 0.94484 1.02127 1.22224 1.00971 0.99182 0.96594 1.21897 0.95478 0.92447 0.91286 1.86343 1.54930 1.19059 1.71067 0.93880 0.94267 0.91528 0.99199 1.00456 0.93044 0.90500 0.90933 0.90315 0.91761 0.90205 0.93789 0.90905 0.89500 0.88921 0.96255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.58 71.98 0.62 -4.02 16 2 C -0.08 -3.37 2.04 -10.80 -0.02 -3.39 16 3 H 0.07 2.94 8.14 -2.38 -0.02 2.93 16 4 C 0.04 2.28 4.24 29.85 0.13 2.40 16 5 C -0.53 -30.94 8.41 25.60 0.22 -30.72 16 6 H 0.06 3.51 7.06 -2.91 -0.02 3.49 16 7 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 8 N -0.94 -59.08 13.29 21.45 0.28 -58.79 16 9 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.11 3.93 2.01 29.96 0.06 3.99 16 14 H 0.04 1.64 6.68 -2.38 -0.02 1.63 16 15 C -0.14 -3.76 3.84 30.12 0.12 -3.65 16 16 C -0.12 -2.54 5.93 31.14 0.18 -2.36 16 17 C -0.13 -2.78 5.31 30.32 0.16 -2.62 16 18 C -0.15 -3.48 5.67 30.49 0.17 -3.31 16 19 C 0.07 2.05 6.39 72.54 0.46 2.51 16 20 O -0.40 -15.06 8.36 -97.28 -0.81 -15.88 16 21 H 0.04 1.78 6.95 -2.39 -0.02 1.76 16 22 H 0.04 1.62 7.70 -2.39 -0.02 1.60 16 23 H 0.07 2.10 6.96 -2.39 -0.02 2.09 16 24 H -0.01 -0.64 7.85 -2.38 -0.02 -0.66 16 25 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 26 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 27 H 0.08 1.98 7.39 -2.39 -0.02 1.96 16 28 H 0.07 1.97 7.31 -2.39 -0.02 1.95 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.11 6.60 -2.39 -0.02 1.10 16 33 H 0.07 1.66 7.16 -2.38 -0.02 1.65 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.02 0.63 7.68 -2.39 -0.02 0.61 16 Total: -1.00 -66.91 275.01 5.08 -61.83 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.02 Total: 6.38 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 2.56 Total: -41.01 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.28 Total: -58.79 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.81 Total: -15.88 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.91 5.08 -61.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.313 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds