Wall clock time and date at job start Mon Mar 30 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47069 * 2 1 4 4 C 1.53002 * 109.46986 * 120.00232 * 2 1 3 5 5 C 1.50697 * 109.46914 * 294.99424 * 4 2 1 6 6 H 1.08006 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99866 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00053 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46834 * 90.00048 * 9 7 5 11 11 H 1.48497 * 109.47052 * 209.99806 * 9 7 5 12 12 H 1.48496 * 109.46890 * 330.00335 * 9 7 5 13 13 C 1.52998 * 109.46970 * 239.99739 * 2 1 3 14 14 H 1.09002 * 109.11175 * 184.20800 * 13 2 1 15 15 C 1.54631 * 109.15581 * 64.99866 * 13 2 1 16 16 C 1.50977 * 109.26395 * 164.92617 * 15 13 2 17 17 C 1.54205 * 112.78550 * 92.27115 * 16 15 13 18 18 C 1.53466 * 111.69237 * 318.46365 * 17 16 15 19 19 C 1.51076 * 111.29048 * 319.20967 * 18 17 16 20 20 O 1.36326 * 109.15545 * 303.41929 * 13 2 1 21 21 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46944 * 300.00178 * 1 2 3 23 23 H 1.09000 * 109.47329 * 59.99866 * 1 2 3 24 24 H 1.08998 * 109.47644 * 54.99826 * 4 2 1 25 25 H 1.09000 * 109.46971 * 175.00121 * 4 2 1 26 26 H 0.96997 * 119.99990 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.51458 * 284.87733 * 15 13 2 28 28 H 1.08997 * 109.51268 * 44.97806 * 15 13 2 29 29 H 1.09004 * 108.81509 * 213.21182 * 16 15 13 30 30 H 1.08997 * 108.81420 * 331.49028 * 16 15 13 31 31 H 1.08996 * 109.05084 * 197.87324 * 17 16 15 32 32 H 1.08998 * 108.94162 * 78.97447 * 17 16 15 33 33 H 1.09000 * 109.11582 * 198.75040 * 18 17 16 34 34 H 1.08996 * 109.07212 * 79.64542 * 18 17 16 35 35 H 1.08998 * 109.86051 * 335.00295 * 19 18 17 36 36 H 1.08999 * 109.92173 * 214.00894 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0801 0.9742 2.3756 7 6 1.9933 -0.4017 3.7282 8 7 2.6772 -1.5183 3.8511 9 14 1.4986 0.5628 5.2497 10 1 0.1717 0.0936 5.7233 11 1 2.5081 0.3534 6.3184 12 1 1.4226 2.0079 4.9166 13 6 2.0400 -0.7213 -1.2492 14 1 3.1274 -0.7838 -1.2063 15 6 1.6271 0.0830 -2.5037 16 6 2.4240 -0.4017 -3.6908 17 6 1.7054 -1.5165 -4.4775 18 6 1.0361 -2.5309 -3.5404 19 6 1.9169 -2.8464 -2.3543 20 8 1.5204 -1.9812 -1.2817 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -1.7198 1.2952 25 1 3.1263 -0.7995 1.2056 26 1 2.9251 -1.8409 4.7316 27 1 0.5638 -0.0617 -2.6953 28 1 1.8265 1.1419 -2.3391 29 1 2.6069 0.4400 -4.3588 30 1 3.3825 -0.7830 -3.3387 31 1 2.4318 -2.0354 -5.1029 32 1 0.9450 -1.0658 -5.1151 33 1 0.8379 -3.4499 -4.0922 34 1 0.0923 -2.1180 -3.1843 35 1 2.9609 -2.6649 -2.6097 36 1 1.7836 -3.8872 -2.0591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:02 Heat of formation + Delta-G solvation = -76.905757 kcal Electronic energy + Delta-G solvation = -14928.460544 eV Core-core repulsion = 12604.519983 eV Total energy + Delta-G solvation = -2323.940561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66396 -35.23009 -34.26870 -32.45823 -30.66676 -27.01318 -26.21065 -25.30563 -23.35541 -21.31225 -19.53313 -18.96723 -16.46025 -15.99565 -15.71099 -14.85952 -14.72487 -14.28260 -13.40083 -13.07503 -12.83814 -12.54355 -12.24236 -11.97670 -11.65274 -11.33387 -11.01505 -10.83488 -10.75916 -10.59695 -10.42939 -10.30345 -10.11429 -9.84520 -9.62999 -9.12455 -8.84741 -8.66161 -8.23435 -5.88874 -3.89859 3.37757 3.43710 3.46868 4.25123 4.54048 4.85699 4.97025 5.03290 5.18453 5.34536 5.46506 5.53278 5.72138 5.77415 5.79174 5.91119 6.00812 6.14772 6.17232 6.19947 6.28921 6.30892 6.36937 6.51424 6.64254 6.74951 7.06093 7.28194 7.31555 7.81451 8.00068 8.15989 8.27033 8.55676 9.17474 9.72607 11.22512 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.059463 B = 0.007019 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.767931 B = 3988.298706 C = 4164.110363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 H 0.064 0.936 4 C 0.031 3.969 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.111 3.889 14 H 0.036 0.964 15 C -0.158 4.158 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.152 4.152 19 C 0.066 3.934 20 O -0.364 6.364 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.025 0.975 25 H 0.010 0.990 26 H 0.258 0.742 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -0.056 -14.772 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.006 4.006 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.052 3.948 14 H 0.054 0.946 15 C -0.196 4.196 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.189 4.189 19 C -0.011 4.011 20 O -0.281 6.281 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.687 -0.223 -14.512 14.611 hybrid contribution 0.031 0.586 0.576 0.823 sum -1.655 0.363 -13.936 14.038 Atomic orbital electron populations 1.21626 0.95895 1.01348 0.99515 1.21337 0.96024 0.98134 0.94169 0.91766 1.19084 0.95691 0.96021 0.89809 1.21298 1.34435 1.08211 0.91233 0.92723 1.25014 0.95431 0.95103 0.98983 1.69980 1.39136 1.21292 1.23186 0.86662 0.78204 0.80411 0.83118 1.20768 1.21367 1.19984 1.21456 0.95924 0.82915 0.94496 0.94639 1.22365 1.00907 1.00629 0.95661 1.21492 0.99392 0.97839 0.97402 1.21860 0.99422 0.96406 0.97757 1.22018 1.00751 0.98985 0.97193 1.22339 0.97278 0.94389 0.87045 1.86433 1.70133 1.23555 1.48024 0.92815 0.92482 0.95321 0.95640 0.97169 0.93204 0.91125 0.91431 0.92539 0.92395 0.92498 0.92450 0.91849 0.90660 0.93191 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.60 37.16 0.32 -2.22 16 2 C -0.08 -1.67 2.13 -90.62 -0.19 -1.86 16 3 H 0.06 1.35 8.07 -51.93 -0.42 0.93 16 4 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 5 C -0.51 -14.78 8.41 -34.44 -0.29 -15.07 16 6 H 0.05 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.11 2.04 1.97 -25.87 -0.05 1.98 16 14 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 15 C -0.16 -2.33 4.33 -26.89 -0.12 -2.45 16 16 C -0.12 -1.54 5.31 -27.12 -0.14 -1.68 16 17 C -0.12 -1.30 5.93 -25.86 -0.15 -1.45 16 18 C -0.15 -1.84 5.43 -27.46 -0.15 -1.99 16 19 C 0.07 0.94 6.48 36.19 0.23 1.18 16 20 O -0.36 -6.79 8.18 -20.79 -0.17 -6.96 16 21 H 0.05 1.12 7.60 -51.93 -0.39 0.72 16 22 H 0.06 1.21 6.95 -51.92 -0.36 0.85 16 23 H 0.03 0.49 6.91 -51.93 -0.36 0.13 16 24 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.07 1.05 6.39 -51.93 -0.33 0.72 16 28 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.75 6.61 -51.93 -0.34 0.40 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.01 7.31 -51.93 -0.38 0.63 16 35 H 0.05 0.68 6.68 -51.93 -0.35 0.33 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -30.69 274.97 -7.27 -37.96 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.20 Total: -3.98 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.76 Total: -21.33 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.74 Total: -26.92 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.17 Total: -6.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.69 -7.27 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.948 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds