Wall clock time and date at job start Mon Mar 30 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47069 * 2 1 4 4 C 1.53002 * 109.46986 * 120.00232 * 2 1 3 5 5 C 1.50697 * 109.46914 * 294.99424 * 4 2 1 6 6 H 1.08006 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99866 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00053 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46834 * 90.00048 * 9 7 5 11 11 H 1.48497 * 109.47052 * 209.99806 * 9 7 5 12 12 H 1.48496 * 109.46890 * 330.00335 * 9 7 5 13 13 C 1.52998 * 109.46970 * 239.99739 * 2 1 3 14 14 H 1.09002 * 109.11175 * 184.20800 * 13 2 1 15 15 C 1.54631 * 109.15581 * 64.99866 * 13 2 1 16 16 C 1.50977 * 109.26395 * 164.92617 * 15 13 2 17 17 C 1.54205 * 112.78550 * 92.27115 * 16 15 13 18 18 C 1.53466 * 111.69237 * 318.46365 * 17 16 15 19 19 C 1.51076 * 111.29048 * 319.20967 * 18 17 16 20 20 O 1.36326 * 109.15545 * 303.41929 * 13 2 1 21 21 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46944 * 300.00178 * 1 2 3 23 23 H 1.09000 * 109.47329 * 59.99866 * 1 2 3 24 24 H 1.08998 * 109.47644 * 54.99826 * 4 2 1 25 25 H 1.09000 * 109.46971 * 175.00121 * 4 2 1 26 26 H 0.96997 * 119.99990 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.51458 * 284.87733 * 15 13 2 28 28 H 1.08997 * 109.51268 * 44.97806 * 15 13 2 29 29 H 1.09004 * 108.81509 * 213.21182 * 16 15 13 30 30 H 1.08997 * 108.81420 * 331.49028 * 16 15 13 31 31 H 1.08996 * 109.05084 * 197.87324 * 17 16 15 32 32 H 1.08998 * 108.94162 * 78.97447 * 17 16 15 33 33 H 1.09000 * 109.11582 * 198.75040 * 18 17 16 34 34 H 1.08996 * 109.07212 * 79.64542 * 18 17 16 35 35 H 1.08998 * 109.86051 * 335.00295 * 19 18 17 36 36 H 1.08999 * 109.92173 * 214.00894 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0801 0.9742 2.3756 7 6 1.9933 -0.4017 3.7282 8 7 2.6772 -1.5183 3.8511 9 14 1.4986 0.5628 5.2497 10 1 0.1717 0.0936 5.7233 11 1 2.5081 0.3534 6.3184 12 1 1.4226 2.0079 4.9166 13 6 2.0400 -0.7213 -1.2492 14 1 3.1274 -0.7838 -1.2063 15 6 1.6271 0.0830 -2.5037 16 6 2.4240 -0.4017 -3.6908 17 6 1.7054 -1.5165 -4.4775 18 6 1.0361 -2.5309 -3.5404 19 6 1.9169 -2.8464 -2.3543 20 8 1.5204 -1.9812 -1.2817 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -1.7198 1.2952 25 1 3.1263 -0.7995 1.2056 26 1 2.9251 -1.8409 4.7316 27 1 0.5638 -0.0617 -2.6953 28 1 1.8265 1.1419 -2.3391 29 1 2.6069 0.4400 -4.3588 30 1 3.3825 -0.7830 -3.3387 31 1 2.4318 -2.0354 -5.1029 32 1 0.9450 -1.0658 -5.1151 33 1 0.8379 -3.4499 -4.0922 34 1 0.0923 -2.1180 -3.1843 35 1 2.9609 -2.6649 -2.6097 36 1 1.7836 -3.8872 -2.0591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:02 Heat of formation + Delta-G solvation = -94.536911 kcal Electronic energy + Delta-G solvation = -14929.225088 eV Core-core repulsion = 12604.519983 eV Total energy + Delta-G solvation = -2324.705105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98253 -36.80338 -35.55300 -34.44244 -32.13546 -28.92725 -27.44156 -26.73591 -25.12648 -22.78487 -20.84893 -20.34298 -18.52816 -17.47441 -16.95360 -16.59747 -16.00242 -15.74838 -14.86420 -14.67095 -14.23049 -14.13110 -13.71643 -13.32099 -13.20029 -12.92348 -12.72038 -12.64531 -12.23112 -12.20043 -11.79249 -11.73168 -11.44195 -11.33261 -11.23236 -11.00719 -10.63072 -10.51494 -10.12625 -8.14944 -6.25080 1.40031 1.42035 1.52769 2.43250 2.96549 3.17662 3.82276 3.93543 4.04696 4.10784 4.20196 4.30148 4.45054 4.53470 4.59448 4.66390 4.84696 4.86473 4.96034 4.98789 5.10100 5.17899 5.24809 5.25871 5.32530 5.42212 5.43927 5.50393 5.54323 5.58232 5.85414 5.94211 6.31315 6.90144 6.94852 7.42962 8.97231 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.059463 B = 0.007019 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.767931 B = 3988.298706 C = 4164.110363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 H 0.068 0.932 4 C 0.041 3.959 5 C -0.531 4.531 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.116 3.884 14 H 0.019 0.981 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.146 4.146 19 C 0.058 3.942 20 O -0.395 6.395 21 H 0.039 0.961 22 H 0.041 0.959 23 H 0.063 0.937 24 H -0.011 1.011 25 H -0.022 1.022 26 H 0.261 0.739 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 1.052 -16.131 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.004 3.996 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.185 1.185 13 C 0.057 3.943 14 H 0.037 0.963 15 C -0.185 4.185 16 C -0.162 4.162 17 C -0.151 4.151 18 C -0.184 4.184 19 C -0.017 4.017 20 O -0.314 6.314 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.008 0.992 25 H -0.004 1.004 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.500 0.891 -15.891 16.112 hybrid contribution 0.317 0.166 0.993 1.056 sum -2.183 1.058 -14.898 15.095 Atomic orbital electron populations 1.21501 0.94637 1.00716 1.00449 1.21239 0.97018 0.97964 0.93315 0.91355 1.18907 0.93404 0.94778 0.92541 1.21713 1.34399 1.08607 0.92222 0.91937 1.26007 0.95256 0.96134 1.02774 1.70132 1.40343 1.23129 1.24188 0.85472 0.77971 0.79300 0.78456 1.19903 1.20878 1.18544 1.21268 0.94763 0.83447 0.94787 0.96277 1.22238 1.01391 1.00240 0.94605 1.21488 0.98683 0.99138 0.96852 1.21863 1.00045 0.95735 0.97470 1.21946 0.99517 1.00456 0.96477 1.22598 0.98219 0.93916 0.87001 1.86362 1.70581 1.24125 1.50375 0.94193 0.93943 0.91826 0.99223 1.00409 0.93010 0.90796 0.90810 0.90527 0.93213 0.90806 0.90994 0.89557 0.91924 0.92698 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 8.60 71.98 0.62 -4.00 16 2 C -0.08 -3.34 2.13 -10.79 -0.02 -3.36 16 3 H 0.07 2.87 8.07 -2.39 -0.02 2.85 16 4 C 0.04 2.28 4.26 29.85 0.13 2.41 16 5 C -0.53 -31.25 8.41 25.60 0.22 -31.03 16 6 H 0.06 3.50 7.06 -2.91 -0.02 3.48 16 7 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 8 N -0.94 -59.46 13.29 21.45 0.28 -59.18 16 9 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.12 4.29 1.97 31.15 0.06 4.35 16 14 H 0.02 0.76 7.68 -2.39 -0.02 0.74 16 15 C -0.15 -4.06 4.33 30.49 0.13 -3.93 16 16 C -0.12 -2.77 5.31 30.34 0.16 -2.61 16 17 C -0.11 -2.15 5.93 31.16 0.18 -1.96 16 18 C -0.15 -3.22 5.43 30.12 0.16 -3.06 16 19 C 0.06 1.63 6.48 71.36 0.46 2.09 16 20 O -0.40 -15.00 8.18 -97.29 -0.80 -15.80 16 21 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 22 H 0.04 1.78 6.95 -2.38 -0.02 1.76 16 23 H 0.06 2.07 6.91 -2.39 -0.02 2.05 16 24 H -0.01 -0.67 7.91 -2.39 -0.02 -0.68 16 25 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.07 2.01 6.39 -2.39 -0.02 1.99 16 28 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.19 6.61 -2.39 -0.02 1.18 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.56 7.31 -2.39 -0.02 1.54 16 35 H 0.05 1.46 6.68 -2.39 -0.02 1.45 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.69 274.97 5.10 -62.58 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.02 Total: 5.66 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 2.57 Total: -40.92 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.28 Total: -59.18 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.80 Total: -15.80 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.69 5.10 -62.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.953 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds