Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46764 * 2 1 4 4 C 1.53001 * 109.46671 * 119.99782 * 2 1 3 5 5 C 1.50697 * 109.47139 * 294.99612 * 4 2 1 6 6 H 1.08003 * 120.00336 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99910 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99941 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99854 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47461 * 60.00142 * 9 7 5 11 11 H 1.48501 * 109.47017 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47259 * 300.00220 * 9 7 5 13 13 C 1.52999 * 109.47122 * 239.99262 * 2 1 3 14 14 H 1.08992 * 108.94197 * 301.25818 * 13 2 1 15 15 C 1.45992 * 108.95092 * 60.00233 * 13 2 1 16 16 C 1.54271 * 111.66240 * 180.68789 * 15 13 2 17 17 C 1.50344 * 108.47328 * 281.86737 * 16 15 13 18 18 C 1.54615 * 112.88715 * 92.17436 * 17 16 15 19 19 C 1.54347 * 111.44738 * 319.00270 * 18 17 16 20 20 O 1.39961 * 112.57443 * 319.31531 * 19 18 17 21 21 H 1.09002 * 109.47436 * 60.00411 * 1 2 3 22 22 H 1.09009 * 109.47085 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47510 * 300.00410 * 1 2 3 24 24 H 1.09002 * 109.47451 * 55.00207 * 4 2 1 25 25 H 1.09001 * 109.46461 * 175.00197 * 4 2 1 26 26 H 0.96999 * 119.99686 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.03124 * 301.22776 * 15 13 2 28 28 H 1.08996 * 109.02989 * 60.14985 * 15 13 2 29 29 H 1.08997 * 109.63473 * 41.63767 * 16 15 13 30 30 H 1.09002 * 109.63232 * 162.23421 * 16 15 13 31 31 H 1.09000 * 108.82719 * 331.30171 * 17 16 15 32 32 H 1.09000 * 108.73398 * 212.98921 * 17 16 15 33 33 H 1.08993 * 109.08379 * 198.49165 * 18 17 16 34 34 H 1.09007 * 109.02818 * 79.47517 * 18 17 16 35 35 H 1.09008 * 108.86192 * 198.51468 * 19 18 17 36 36 H 1.09006 * 108.77901 * 80.05657 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9931 -0.4016 3.7283 8 7 2.6770 -1.5181 3.8512 9 14 1.4984 0.5629 5.2496 10 1 0.0183 0.6685 5.3092 11 1 1.9944 -0.1364 6.4621 12 1 2.0895 1.9237 5.1869 13 6 2.0400 -0.7214 -1.2491 14 1 1.6536 -1.7405 -1.2517 15 6 1.5472 -0.0245 -2.4336 16 6 2.0123 -0.7123 -3.7337 17 6 3.4448 -0.3328 -3.9873 18 6 4.4499 -1.3397 -3.3819 19 6 4.0042 -1.8087 -1.9806 20 8 3.4809 -0.7667 -1.2065 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6053 -1.7198 1.2953 25 1 3.1262 -0.7994 1.2056 26 1 2.9249 -1.8406 4.7318 27 1 0.4575 -0.0096 -2.4095 28 1 1.9167 1.0008 -2.4221 29 1 1.9326 -1.7939 -3.6247 30 1 1.3930 -0.3786 -4.5664 31 1 3.6299 0.6506 -3.5551 32 1 3.6074 -0.2787 -5.0637 33 1 5.4276 -0.8644 -3.3044 34 1 4.5258 -2.2053 -4.0401 35 1 4.8627 -2.2360 -1.4624 36 1 3.2423 -2.5800 -2.0946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = -75.809265 kcal Electronic energy + Delta-G solvation = -14901.229439 eV Core-core repulsion = 12577.336426 eV Total energy + Delta-G solvation = -2323.893013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.46969 -35.25543 -34.33782 -32.57698 -30.69846 -27.32706 -25.98890 -25.19875 -23.19014 -20.94515 -19.84737 -19.18623 -16.59684 -16.08334 -15.58281 -14.63650 -14.60691 -14.07312 -13.34838 -13.11599 -13.04559 -12.57601 -12.15599 -11.99627 -11.64409 -11.41011 -11.00856 -10.85279 -10.81871 -10.59402 -10.31256 -10.26185 -10.11658 -9.98193 -9.62123 -9.27882 -8.92584 -8.70647 -8.23380 -5.89344 -3.90190 3.38603 3.42850 3.45291 4.29030 4.53423 4.88177 4.98803 5.12985 5.32885 5.39389 5.44746 5.46282 5.73956 5.79606 5.83024 5.97477 6.05453 6.08598 6.20195 6.25504 6.27071 6.30936 6.37389 6.42857 6.51282 6.64026 7.01645 7.06298 7.27011 7.79835 7.88576 8.04048 8.15051 8.55048 9.16703 9.72079 11.22078 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050111 B = 0.007428 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.621922 B = 3768.604584 C = 4131.221492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.062 0.938 4 C 0.031 3.969 5 C -0.514 4.514 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.093 3.907 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.146 4.146 19 C 0.060 3.940 20 O -0.353 6.353 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.010 0.990 25 H 0.027 0.973 26 H 0.259 0.741 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 0.323 -14.212 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.006 4.006 5 C -0.552 4.552 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.036 3.964 14 H 0.068 0.932 15 C -0.185 4.185 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.184 4.184 19 C -0.018 4.018 20 O -0.272 6.272 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.029 0.971 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.440 0.339 -13.965 13.976 hybrid contribution -0.302 0.256 0.704 0.807 sum -0.742 0.596 -13.261 13.295 Atomic orbital electron populations 1.21798 0.95737 1.00962 1.00603 1.21307 0.94531 0.99828 0.94651 0.91933 1.19067 0.97091 0.94723 0.89680 1.21253 1.34527 1.08227 0.91236 0.92819 1.25007 0.95413 0.95102 0.98970 1.69965 1.39054 1.21278 1.23299 0.86724 0.78774 0.80194 0.82671 1.20379 1.21403 1.20341 1.21189 0.80630 0.99021 0.95528 0.93159 1.21335 1.01524 1.00899 0.94702 1.21347 0.96204 1.00607 0.97649 1.21310 0.94551 1.00002 0.99451 1.22653 0.99347 0.99132 0.97279 1.22203 0.98656 0.90035 0.90901 1.87860 1.20220 1.51735 1.67340 0.94582 0.93607 0.91506 0.97148 0.95451 0.93147 0.90727 0.91357 0.92080 0.92122 0.91704 0.93028 0.91883 0.92046 0.90846 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.59 37.16 0.32 -2.19 16 2 C -0.08 -1.79 2.10 -90.62 -0.19 -1.98 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.83 4.35 -27.88 -0.12 0.71 16 5 C -0.51 -14.78 8.41 -34.44 -0.29 -15.07 16 6 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.09 1.69 1.70 -30.05 -0.05 1.64 16 14 H 0.05 0.91 7.34 -51.93 -0.38 0.53 16 15 C -0.15 -2.17 4.48 -29.39 -0.13 -2.30 16 16 C -0.12 -1.50 5.61 -27.39 -0.15 -1.65 16 17 C -0.12 -1.43 5.47 -27.21 -0.15 -1.58 16 18 C -0.15 -1.85 6.26 -25.18 -0.16 -2.00 16 19 C 0.06 0.94 6.09 37.86 0.23 1.17 16 20 O -0.35 -6.86 9.07 -32.82 -0.30 -7.15 16 21 H 0.04 0.56 6.36 -51.93 -0.33 0.23 16 22 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 23 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.03 0.80 7.43 -51.93 -0.39 0.41 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.07 1.02 6.13 -51.93 -0.32 0.70 16 28 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 29 H 0.06 0.75 7.07 -51.93 -0.37 0.39 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.88 7.33 -51.93 -0.38 0.50 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.04 0.65 6.52 -51.93 -0.34 0.31 16 LS Contribution 274.90 15.07 4.14 4.14 Total: -1.00 -30.71 274.90 -7.37 -38.08 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -6.14 Total: -3.58 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -0.79 Total: -21.72 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.74 Total: -26.86 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.30 Total: -7.15 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.71 -7.37 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.728 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds