Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46764 * 2 1 4 4 C 1.53001 * 109.46671 * 119.99782 * 2 1 3 5 5 C 1.50697 * 109.47139 * 294.99612 * 4 2 1 6 6 H 1.08003 * 120.00336 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99910 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99941 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99854 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47461 * 60.00142 * 9 7 5 11 11 H 1.48501 * 109.47017 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47259 * 300.00220 * 9 7 5 13 13 C 1.52999 * 109.47122 * 239.99262 * 2 1 3 14 14 H 1.08992 * 108.94197 * 301.25818 * 13 2 1 15 15 C 1.45992 * 108.95092 * 60.00233 * 13 2 1 16 16 C 1.54271 * 111.66240 * 180.68789 * 15 13 2 17 17 C 1.50344 * 108.47328 * 281.86737 * 16 15 13 18 18 C 1.54615 * 112.88715 * 92.17436 * 17 16 15 19 19 C 1.54347 * 111.44738 * 319.00270 * 18 17 16 20 20 O 1.39961 * 112.57443 * 319.31531 * 19 18 17 21 21 H 1.09002 * 109.47436 * 60.00411 * 1 2 3 22 22 H 1.09009 * 109.47085 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47510 * 300.00410 * 1 2 3 24 24 H 1.09002 * 109.47451 * 55.00207 * 4 2 1 25 25 H 1.09001 * 109.46461 * 175.00197 * 4 2 1 26 26 H 0.96999 * 119.99686 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.03124 * 301.22776 * 15 13 2 28 28 H 1.08996 * 109.02989 * 60.14985 * 15 13 2 29 29 H 1.08997 * 109.63473 * 41.63767 * 16 15 13 30 30 H 1.09002 * 109.63232 * 162.23421 * 16 15 13 31 31 H 1.09000 * 108.82719 * 331.30171 * 17 16 15 32 32 H 1.09000 * 108.73398 * 212.98921 * 17 16 15 33 33 H 1.08993 * 109.08379 * 198.49165 * 18 17 16 34 34 H 1.09007 * 109.02818 * 79.47517 * 18 17 16 35 35 H 1.09008 * 108.86192 * 198.51468 * 19 18 17 36 36 H 1.09006 * 108.77901 * 80.05657 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9931 -0.4016 3.7283 8 7 2.6770 -1.5181 3.8512 9 14 1.4984 0.5629 5.2496 10 1 0.0183 0.6685 5.3092 11 1 1.9944 -0.1364 6.4621 12 1 2.0895 1.9237 5.1869 13 6 2.0400 -0.7214 -1.2491 14 1 1.6536 -1.7405 -1.2517 15 6 1.5472 -0.0245 -2.4336 16 6 2.0123 -0.7123 -3.7337 17 6 3.4448 -0.3328 -3.9873 18 6 4.4499 -1.3397 -3.3819 19 6 4.0042 -1.8087 -1.9806 20 8 3.4809 -0.7667 -1.2065 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6053 -1.7198 1.2953 25 1 3.1262 -0.7994 1.2056 26 1 2.9249 -1.8406 4.7318 27 1 0.4575 -0.0096 -2.4095 28 1 1.9167 1.0008 -2.4221 29 1 1.9326 -1.7939 -3.6247 30 1 1.3930 -0.3786 -4.5664 31 1 3.6299 0.6506 -3.5551 32 1 3.6074 -0.2787 -5.0637 33 1 5.4276 -0.8644 -3.3044 34 1 4.5258 -2.2053 -4.0401 35 1 4.8627 -2.2360 -1.4624 36 1 3.2423 -2.5800 -2.0946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = -93.911928 kcal Electronic energy + Delta-G solvation = -14902.014429 eV Core-core repulsion = 12577.336426 eV Total energy + Delta-G solvation = -2324.678004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.80764 -36.90801 -35.51909 -34.59129 -32.20176 -29.12270 -27.38329 -26.63275 -24.98050 -22.36088 -20.98507 -20.80546 -18.58149 -17.59196 -16.92567 -16.57954 -15.81867 -15.54001 -14.90695 -14.53095 -14.29276 -14.02068 -13.80759 -13.49391 -13.20058 -12.98353 -12.77174 -12.66689 -12.28961 -12.09795 -11.81458 -11.57396 -11.55717 -11.38098 -11.18125 -11.05338 -10.77707 -10.51450 -10.22573 -8.15275 -6.25098 1.39256 1.42946 1.50431 2.42823 2.96718 3.17360 3.72502 4.00138 4.06960 4.12701 4.17820 4.29916 4.45148 4.55290 4.62203 4.64746 4.72448 4.86859 4.89466 4.91084 5.14875 5.17003 5.24497 5.28472 5.33294 5.36684 5.42443 5.46201 5.53556 5.60854 5.84232 5.91714 6.31301 6.55506 6.91974 7.42615 8.96657 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050111 B = 0.007428 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.621922 B = 3768.604584 C = 4131.221492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 H 0.051 0.949 4 C 0.041 3.959 5 C -0.533 4.533 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.100 3.900 14 H 0.047 0.953 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.050 3.950 20 O -0.388 6.388 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.049 0.951 24 H -0.017 1.017 25 H -0.012 1.012 26 H 0.261 0.739 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 1.132 -15.619 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.100 4.100 3 H 0.069 0.931 4 C 0.004 3.996 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.043 3.957 14 H 0.065 0.935 15 C -0.182 4.182 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.178 4.178 19 C -0.027 4.027 20 O -0.308 6.308 21 H 0.094 0.906 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.002 0.998 25 H 0.006 0.994 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.545 1.155 -15.389 15.509 hybrid contribution 0.097 -0.043 1.150 1.155 sum -1.449 1.112 -14.239 14.356 Atomic orbital electron populations 1.21716 0.93516 1.01393 1.01720 1.21212 0.96429 0.98642 0.93758 0.93062 1.18888 0.94474 0.93929 0.92353 1.21683 1.34504 1.08624 0.92291 0.92097 1.25989 0.95249 0.96133 1.02721 1.70118 1.40245 1.23091 1.24232 0.85546 0.79043 0.78669 0.78058 1.18904 1.20971 1.19421 1.21120 0.80288 0.98764 0.95523 0.93547 1.21270 1.02257 1.00307 0.94319 1.21338 0.96509 1.00508 0.96925 1.21332 0.94427 0.98826 1.00826 1.22603 0.99370 1.00307 0.95486 1.22415 0.98462 0.89534 0.92330 1.87805 1.20970 1.53076 1.68904 0.90591 0.93494 0.93207 0.99829 0.99379 0.93013 0.89179 0.91847 0.91855 0.89520 0.93333 0.90477 0.91929 0.89561 0.91571 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.59 71.98 0.62 -3.99 16 2 C -0.08 -3.51 2.10 -10.79 -0.02 -3.54 16 3 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.04 2.26 4.35 29.85 0.13 2.39 16 5 C -0.53 -31.34 8.41 25.60 0.22 -31.13 16 6 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -59.26 13.29 21.45 0.28 -58.97 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.10 3.60 1.70 28.44 0.05 3.65 16 14 H 0.05 1.68 7.34 -2.39 -0.02 1.67 16 15 C -0.14 -3.95 4.48 28.87 0.13 -3.82 16 16 C -0.12 -2.51 5.61 30.17 0.17 -2.34 16 17 C -0.12 -2.58 5.47 30.29 0.17 -2.41 16 18 C -0.14 -3.29 6.26 31.60 0.20 -3.09 16 19 C 0.05 1.56 6.09 72.44 0.44 2.00 16 20 O -0.39 -15.45 9.07 -140.36 -1.27 -16.72 16 21 H 0.08 2.16 6.36 -2.39 -0.02 2.14 16 22 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.05 1.97 6.95 -2.39 -0.02 1.95 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H -0.01 -0.76 7.43 -2.39 -0.02 -0.78 16 26 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.09 2.17 6.13 -2.39 -0.01 2.15 16 28 H 0.06 1.81 7.53 -2.39 -0.02 1.79 16 29 H 0.06 1.37 7.07 -2.39 -0.02 1.35 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.24 7.33 -2.39 -0.02 1.22 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.05 1.46 6.52 -2.38 -0.02 1.44 16 Total: -1.00 -68.09 274.90 4.62 -63.47 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.02 Total: 6.61 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 2.55 Total: -42.04 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.28 Total: -58.97 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.27 Total: -16.72 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.09 4.62 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.443 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds