Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47266 * 2 1 4 4 C 1.53003 * 109.47367 * 239.99689 * 2 1 3 5 5 C 1.50701 * 109.47071 * 65.46914 * 4 2 1 6 6 H 1.08008 * 119.99634 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00285 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99587 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46620 * 90.00492 * 9 7 5 11 11 H 1.48495 * 109.47220 * 210.00273 * 9 7 5 12 12 H 1.48494 * 109.47198 * 330.00710 * 9 7 5 13 13 C 1.53009 * 109.46946 * 119.99955 * 2 1 3 14 14 H 1.08994 * 109.63054 * 64.17788 * 13 2 1 15 15 C 1.50283 * 109.63436 * 184.78387 * 13 2 1 16 16 C 1.54598 * 112.95483 * 211.78187 * 15 13 2 17 17 C 1.54351 * 111.45425 * 319.00136 * 16 15 13 18 18 O 1.39957 * 112.56822 * 319.31484 * 17 16 15 19 19 C 1.44222 * 112.37124 * 97.12327 * 18 17 16 20 20 C 1.45988 * 112.10209 * 277.40866 * 19 18 17 21 21 H 1.09002 * 109.47266 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47302 * 300.00478 * 1 2 3 23 23 H 1.09008 * 109.46798 * 60.00323 * 1 2 3 24 24 H 1.08999 * 109.47037 * 185.47262 * 4 2 1 25 25 H 1.09001 * 109.47036 * 305.47120 * 4 2 1 26 26 H 0.96999 * 119.99946 * 179.97438 * 8 7 5 27 27 H 1.09009 * 108.78406 * 332.68385 * 15 13 2 28 28 H 1.09003 * 108.78511 * 90.88306 * 15 13 2 29 29 H 1.09002 * 109.08162 * 198.49354 * 16 15 13 30 30 H 1.09007 * 109.02709 * 79.47522 * 16 15 13 31 31 H 1.08998 * 108.86285 * 198.51325 * 17 16 15 32 32 H 1.08998 * 108.77853 * 80.05266 * 17 16 15 33 33 H 1.08993 * 108.95823 * 156.73055 * 19 18 17 34 34 H 1.09003 * 108.88394 * 38.03044 * 19 18 17 35 35 H 1.09003 * 109.02761 * 299.47925 * 20 19 18 36 36 H 1.09008 * 108.96785 * 180.60588 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6514 0.0629 -2.4760 6 1 1.0964 0.9839 -2.3747 7 6 2.0051 -0.3948 -3.7275 8 7 2.6813 -1.5160 -3.8507 9 14 1.5226 0.5769 -5.2482 10 1 2.5952 1.5510 -5.5740 11 1 1.3346 -0.3528 -6.3907 12 1 0.2548 1.3052 -4.9887 13 6 2.0400 -0.7213 1.2493 14 1 1.7404 -1.7687 1.2153 15 6 3.5381 -0.6220 1.3135 16 6 4.1960 -1.8530 1.9783 17 6 3.3940 -2.3259 3.2094 18 8 2.9224 -1.2604 3.9848 19 6 1.5541 -0.9224 3.6788 20 6 1.4511 -0.0543 2.5096 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.1256 -0.8069 -1.2015 25 1 1.5989 -1.7168 -1.2995 26 1 2.9298 -1.8382 -4.7312 27 1 3.9269 -0.5205 0.3002 28 1 3.8069 0.2690 1.8810 29 1 5.2071 -1.5916 2.2906 30 1 4.2461 -2.6647 1.2523 31 1 4.0350 -2.9548 3.8272 32 1 2.5440 -2.9170 2.8685 33 1 1.1146 -0.4141 4.5370 34 1 0.9981 -1.8404 3.4883 35 1 1.9903 0.8723 2.7063 36 1 0.4008 0.1770 2.3315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = -92.471788 kcal Electronic energy + Delta-G solvation = -14908.552686 eV Core-core repulsion = 12583.937132 eV Total energy + Delta-G solvation = -2324.615554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74586 -37.82471 -34.97742 -33.74560 -32.73488 -28.96410 -28.19927 -25.81032 -25.18276 -22.27631 -21.50149 -20.36921 -18.54873 -17.36429 -16.99290 -16.57284 -16.12494 -15.40678 -15.11226 -14.75751 -14.38770 -14.03453 -13.84790 -13.36600 -13.13434 -12.97195 -12.66508 -12.55161 -12.28165 -12.09140 -11.96720 -11.64423 -11.48504 -11.33536 -11.12196 -10.89146 -10.64104 -10.47031 -10.37354 -8.17141 -6.25957 1.38658 1.39450 1.50323 2.41369 3.03214 3.15802 3.74713 3.92051 4.06673 4.19454 4.27703 4.31568 4.43955 4.59195 4.62356 4.68151 4.76117 4.89615 4.93010 4.95872 5.15317 5.16612 5.24259 5.27606 5.29482 5.33805 5.44906 5.51737 5.56215 5.69289 5.92005 5.92689 6.31840 6.38267 6.90864 7.41898 8.94486 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050066 B = 0.007417 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.132269 B = 3774.424581 C = 4148.007176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.075 4.075 3 H 0.048 0.952 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.263 1.263 13 C -0.073 4.073 14 H 0.056 0.944 15 C -0.116 4.116 16 C -0.145 4.145 17 C 0.063 3.937 18 O -0.387 6.387 19 C 0.059 3.941 20 C -0.148 4.148 21 H 0.041 0.959 22 H 0.073 0.927 23 H 0.040 0.960 24 H -0.005 1.005 25 H -0.015 1.015 26 H 0.261 0.739 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 0.553 13.830 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.003 4.003 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.091 4.091 14 H 0.075 0.925 15 C -0.153 4.153 16 C -0.183 4.183 17 C -0.015 4.015 18 O -0.306 6.306 19 C -0.017 4.017 20 C -0.186 4.186 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.013 0.987 25 H 0.003 0.997 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.017 0.543 13.852 14.008 hybrid contribution 0.033 0.089 -1.630 1.633 sum -1.984 0.632 12.222 12.398 Atomic orbital electron populations 1.21750 0.95041 1.00874 1.00994 1.21073 0.96080 0.98248 0.93927 0.93399 1.19070 0.94573 0.94184 0.92488 1.21707 1.34641 1.08177 0.92383 0.92344 1.25934 0.95335 0.96114 1.02564 1.70102 1.40524 1.22719 1.24171 0.85545 0.78983 0.78435 0.78697 1.20029 1.20889 1.18757 1.20831 0.94855 0.99048 0.94379 0.92526 1.21418 0.95702 0.98481 0.99717 1.22599 1.00072 0.97969 0.97639 1.22336 0.98320 0.88763 0.92081 1.87704 1.29346 1.53437 1.60123 1.21702 0.82371 0.99344 0.98250 1.21346 1.02960 0.99935 0.94310 0.93943 0.90854 0.94098 0.98724 0.99708 0.93024 0.94008 0.92457 0.91316 0.92151 0.88915 0.92937 0.87571 0.92276 0.91740 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.63 71.98 0.62 -4.07 16 2 C -0.07 -3.05 1.87 -10.79 -0.02 -3.07 16 3 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.03 1.78 4.31 29.85 0.13 1.91 16 5 C -0.53 -30.35 8.41 25.60 0.22 -30.14 16 6 H 0.06 3.22 7.09 -2.91 -0.02 3.20 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 13 C -0.07 -2.45 1.44 -11.24 -0.02 -2.47 16 14 H 0.06 1.98 7.09 -2.39 -0.02 1.96 16 15 C -0.12 -4.01 4.91 30.26 0.15 -3.86 16 16 C -0.14 -4.26 6.27 31.60 0.20 -4.06 16 17 C 0.06 1.57 6.09 72.44 0.44 2.01 16 18 O -0.39 -10.30 10.35 -140.33 -1.45 -11.75 16 19 C 0.06 1.33 6.12 69.83 0.43 1.76 16 20 C -0.15 -3.87 4.83 28.87 0.14 -3.73 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.07 2.08 6.00 -2.39 -0.01 2.07 16 23 H 0.04 1.61 6.98 -2.38 -0.02 1.60 16 24 H -0.01 -0.31 6.09 -2.39 -0.01 -0.33 16 25 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.04 1.72 5.68 -2.38 -0.01 1.71 16 28 H 0.06 1.90 7.34 -2.39 -0.02 1.89 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.27 6.53 -2.39 -0.02 1.25 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.23 7.34 -2.39 -0.02 1.22 16 35 H 0.06 1.72 7.53 -2.39 -0.02 1.70 16 36 H 0.09 2.16 5.53 -2.38 -0.01 2.15 16 Total: -1.00 -64.49 271.34 4.64 -59.85 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.04 Total: 7.68 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 2.74 Total: -45.39 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.28 Total: -57.32 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.45 Total: -11.75 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.49 4.64 -59.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.626 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds