Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 C 1.53005 * 109.47123 * 119.99529 * 2 1 3 5 5 C 1.50700 * 109.47369 * 295.18914 * 4 2 1 6 6 H 1.07999 * 119.99548 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99956 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47239 * 90.00388 * 9 7 5 11 11 H 1.48506 * 109.46718 * 210.00467 * 9 7 5 12 12 H 1.48500 * 109.47286 * 329.99706 * 9 7 5 13 13 C 1.52994 * 109.47176 * 239.99765 * 2 1 3 14 14 H 1.08997 * 108.94766 * 295.74442 * 13 2 1 15 15 C 1.46282 * 108.96354 * 54.51409 * 13 2 1 16 16 C 1.54201 * 112.07516 * 181.55835 * 15 13 2 17 17 C 1.50414 * 108.77249 * 282.18575 * 16 15 13 18 18 O 1.44181 * 112.77234 * 92.57516 * 17 16 15 19 19 C 1.44191 * 116.92960 * 318.48206 * 18 17 16 20 20 C 1.50471 * 112.70132 * 318.46667 * 19 18 17 21 21 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47127 * 299.99809 * 1 2 3 23 23 H 1.08994 * 109.46910 * 60.00180 * 1 2 3 24 24 H 1.09002 * 109.46523 * 55.18687 * 4 2 1 25 25 H 1.09001 * 109.46902 * 175.18353 * 4 2 1 26 26 H 0.96999 * 119.99732 * 179.97438 * 8 7 5 27 27 H 1.08997 * 108.96062 * 302.22807 * 15 13 2 28 28 H 1.09005 * 108.96099 * 60.89360 * 15 13 2 29 29 H 1.08997 * 109.58766 * 41.97683 * 16 15 13 30 30 H 1.09004 * 109.58851 * 162.40065 * 16 15 13 31 31 H 1.08999 * 108.82205 * 213.43163 * 17 16 15 32 32 H 1.09004 * 108.81683 * 331.83842 * 17 16 15 33 33 H 1.08998 * 108.81827 * 79.32497 * 19 18 17 34 34 H 1.09004 * 108.82186 * 197.72833 * 19 18 17 35 35 H 1.08992 * 109.67240 * 332.86769 * 20 19 18 36 36 H 1.08996 * 109.53756 * 212.41865 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6374 0.0548 2.4769 6 1 1.0744 0.9709 2.3760 7 6 1.9877 -0.4049 3.7286 8 7 2.6737 -1.5202 3.8514 9 14 1.4879 0.5566 5.2503 10 1 0.1611 0.0841 5.7208 11 1 2.4959 0.3480 6.3207 12 1 1.4098 2.0020 4.9190 13 6 2.0400 -0.7213 -1.2492 14 1 1.7358 -1.7669 -1.2031 15 6 1.4413 -0.1037 -2.4324 16 6 1.8787 -0.8031 -3.7352 17 6 3.2702 -0.3509 -4.0838 18 8 4.2894 -1.2220 -3.5535 19 6 4.0980 -1.7087 -2.2097 20 6 3.5802 -0.6483 -1.2762 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6079 -1.7209 1.2935 25 1 3.1266 -0.7965 1.2072 26 1 2.9204 -1.8434 4.7321 27 1 0.3559 -0.1571 -2.3489 28 1 1.7406 0.9436 -2.4751 29 1 1.8710 -1.8834 -3.5903 30 1 1.1950 -0.5356 -4.5409 31 1 3.3671 -0.3158 -5.1689 32 1 3.4243 0.6518 -3.6849 33 1 3.3879 -2.5353 -2.2329 34 1 5.0515 -2.0756 -1.8295 35 1 3.8932 0.3347 -1.6278 36 1 3.9719 -0.8220 -0.2740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = -76.522153 kcal Electronic energy + Delta-G solvation = -14873.232460 eV Core-core repulsion = 12549.308534 eV Total energy + Delta-G solvation = -2323.923926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49102 -36.30997 -33.34354 -32.19198 -31.02542 -27.68044 -25.91143 -25.41704 -23.12675 -20.53258 -20.15762 -19.05628 -16.59575 -16.28633 -15.75525 -14.89858 -14.52146 -13.90477 -13.47731 -13.16999 -13.02799 -12.61029 -12.20633 -12.01811 -11.66388 -11.29927 -11.13046 -10.92773 -10.91471 -10.68938 -10.43203 -10.20364 -10.08282 -9.76205 -9.55098 -9.27711 -8.98245 -8.86128 -8.30866 -5.97830 -3.98764 3.32120 3.38718 3.41712 3.98966 4.47201 4.90389 4.99404 5.14221 5.20778 5.37846 5.40636 5.59217 5.67950 5.84639 5.92357 5.93977 6.00229 6.11642 6.21284 6.27625 6.33660 6.40249 6.49409 6.60832 6.67965 6.74297 7.05125 7.13251 7.23279 7.46036 7.72197 7.87540 8.03152 8.47090 9.07790 9.64551 11.13456 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050828 B = 0.007227 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.749051 B = 3873.486156 C = 4228.780843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.085 4.085 14 H 0.063 0.937 15 C -0.117 4.117 16 C -0.155 4.155 17 C 0.066 3.934 18 O -0.403 6.403 19 C 0.065 3.935 20 C -0.153 4.153 21 H 0.043 0.957 22 H 0.059 0.941 23 H 0.034 0.966 24 H 0.014 0.986 25 H 0.020 0.980 26 H 0.259 0.741 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 1.528 -12.857 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.104 4.104 14 H 0.081 0.919 15 C -0.154 4.154 16 C -0.193 4.193 17 C -0.010 4.010 18 O -0.323 6.323 19 C -0.010 4.010 20 C -0.191 4.191 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.630 1.367 -12.823 12.911 hybrid contribution -0.533 0.524 1.171 1.389 sum -1.163 1.891 -11.652 11.862 Atomic orbital electron populations 1.21811 0.96616 1.00722 1.00140 1.21253 0.94807 0.99113 0.94960 0.92729 1.19213 0.96236 0.95306 0.90289 1.21281 1.34464 1.08404 0.91156 0.92729 1.25010 0.95344 0.95091 0.99042 1.69959 1.39000 1.21308 1.23344 0.86660 0.78241 0.80428 0.83064 1.20764 1.21289 1.19961 1.20302 0.94266 1.00374 0.95413 0.91886 1.20843 1.01259 0.99583 0.93756 1.21966 0.96939 1.01778 0.98622 1.22240 0.87533 0.93371 0.97895 1.88185 1.46639 1.67177 1.30280 1.22368 1.01211 0.96033 0.81426 1.22111 0.96380 0.99152 1.01428 0.93776 0.92154 0.94695 0.96793 0.96158 0.93107 0.91395 0.92353 0.90987 0.91160 0.90393 0.93324 0.93331 0.89886 0.91563 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.43 37.16 0.31 -2.21 16 2 C -0.08 -1.65 1.90 -90.62 -0.17 -1.82 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.66 4.31 -27.88 -0.12 0.54 16 5 C -0.51 -14.31 8.40 -34.44 -0.29 -14.60 16 6 H 0.05 1.48 7.04 -52.49 -0.37 1.12 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.09 -1.42 1.38 -93.18 -0.13 -1.55 16 14 H 0.06 1.10 7.55 -51.93 -0.39 0.70 16 15 C -0.12 -1.64 4.17 -29.30 -0.12 -1.76 16 16 C -0.16 -1.90 5.61 -27.39 -0.15 -2.05 16 17 C 0.07 0.84 6.27 35.87 0.22 1.06 16 18 O -0.40 -6.14 10.88 -35.23 -0.38 -6.52 16 19 C 0.07 0.99 6.27 35.89 0.22 1.21 16 20 C -0.15 -2.52 4.90 -27.36 -0.13 -2.66 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 1.21 6.94 -51.93 -0.36 0.85 16 23 H 0.03 0.55 6.27 -51.93 -0.33 0.22 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.54 5.96 -51.93 -0.31 0.23 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.07 0.93 5.98 -51.93 -0.31 0.62 16 28 H 0.06 0.81 7.56 -51.93 -0.39 0.41 16 29 H 0.07 0.93 7.15 -51.93 -0.37 0.56 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.62 6.66 -51.93 -0.35 0.27 16 33 H 0.05 0.72 6.67 -51.93 -0.35 0.37 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.06 7.14 -51.93 -0.37 0.69 16 36 H 0.09 1.75 5.76 -51.93 -0.30 1.45 16 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -29.41 269.98 -6.92 -36.33 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.86 Total: -2.10 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -0.46 Total: -22.34 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.38 Total: -6.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.41 -6.92 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.195 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds