Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 C 1.53005 * 109.47123 * 119.99529 * 2 1 3 5 5 C 1.50700 * 109.47369 * 295.18914 * 4 2 1 6 6 H 1.07999 * 119.99548 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99956 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47239 * 90.00388 * 9 7 5 11 11 H 1.48506 * 109.46718 * 210.00467 * 9 7 5 12 12 H 1.48500 * 109.47286 * 329.99706 * 9 7 5 13 13 C 1.52994 * 109.47176 * 239.99765 * 2 1 3 14 14 H 1.08997 * 108.94766 * 295.74442 * 13 2 1 15 15 C 1.46282 * 108.96354 * 54.51409 * 13 2 1 16 16 C 1.54201 * 112.07516 * 181.55835 * 15 13 2 17 17 C 1.50414 * 108.77249 * 282.18575 * 16 15 13 18 18 O 1.44181 * 112.77234 * 92.57516 * 17 16 15 19 19 C 1.44191 * 116.92960 * 318.48206 * 18 17 16 20 20 C 1.50471 * 112.70132 * 318.46667 * 19 18 17 21 21 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47127 * 299.99809 * 1 2 3 23 23 H 1.08994 * 109.46910 * 60.00180 * 1 2 3 24 24 H 1.09002 * 109.46523 * 55.18687 * 4 2 1 25 25 H 1.09001 * 109.46902 * 175.18353 * 4 2 1 26 26 H 0.96999 * 119.99732 * 179.97438 * 8 7 5 27 27 H 1.08997 * 108.96062 * 302.22807 * 15 13 2 28 28 H 1.09005 * 108.96099 * 60.89360 * 15 13 2 29 29 H 1.08997 * 109.58766 * 41.97683 * 16 15 13 30 30 H 1.09004 * 109.58851 * 162.40065 * 16 15 13 31 31 H 1.08999 * 108.82205 * 213.43163 * 17 16 15 32 32 H 1.09004 * 108.81683 * 331.83842 * 17 16 15 33 33 H 1.08998 * 108.81827 * 79.32497 * 19 18 17 34 34 H 1.09004 * 108.82186 * 197.72833 * 19 18 17 35 35 H 1.08992 * 109.67240 * 332.86769 * 20 19 18 36 36 H 1.08996 * 109.53756 * 212.41865 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6374 0.0548 2.4769 6 1 1.0744 0.9709 2.3760 7 6 1.9877 -0.4049 3.7286 8 7 2.6737 -1.5202 3.8514 9 14 1.4879 0.5566 5.2503 10 1 0.1611 0.0841 5.7208 11 1 2.4959 0.3480 6.3207 12 1 1.4098 2.0020 4.9190 13 6 2.0400 -0.7213 -1.2492 14 1 1.7358 -1.7669 -1.2031 15 6 1.4413 -0.1037 -2.4324 16 6 1.8787 -0.8031 -3.7352 17 6 3.2702 -0.3509 -4.0838 18 8 4.2894 -1.2220 -3.5535 19 6 4.0980 -1.7087 -2.2097 20 6 3.5802 -0.6483 -1.2762 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6079 -1.7209 1.2935 25 1 3.1266 -0.7965 1.2072 26 1 2.9204 -1.8434 4.7321 27 1 0.3559 -0.1571 -2.3489 28 1 1.7406 0.9436 -2.4751 29 1 1.8710 -1.8834 -3.5903 30 1 1.1950 -0.5356 -4.5409 31 1 3.3671 -0.3158 -5.1689 32 1 3.4243 0.6518 -3.6849 33 1 3.3879 -2.5353 -2.2329 34 1 5.0515 -2.0756 -1.8295 35 1 3.8932 0.3347 -1.6278 36 1 3.9719 -0.8220 -0.2740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = -93.663462 kcal Electronic energy + Delta-G solvation = -14873.975763 eV Core-core repulsion = 12549.308534 eV Total energy + Delta-G solvation = -2324.667229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74157 -37.72277 -35.11752 -33.64737 -32.53360 -29.41429 -27.29749 -26.82394 -24.89732 -22.00265 -21.25954 -20.61523 -18.55698 -17.50055 -17.06626 -16.58619 -16.08638 -15.27775 -14.93756 -14.71963 -14.26896 -14.01751 -13.82523 -13.36237 -13.27099 -12.98872 -12.73727 -12.64695 -12.29622 -12.23793 -12.02795 -11.71598 -11.47166 -11.36583 -11.13471 -10.75947 -10.62813 -10.47678 -10.38954 -8.16864 -6.25440 1.38962 1.39558 1.50361 2.41601 2.89902 3.16304 3.70035 3.83738 4.00685 4.09984 4.17508 4.39586 4.43442 4.59666 4.65694 4.70538 4.77953 4.83652 4.93863 4.99602 5.07649 5.17334 5.21029 5.24718 5.27084 5.36309 5.47796 5.51092 5.54709 5.67389 5.90057 5.92743 6.32058 6.35044 6.91523 7.42467 8.94725 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050828 B = 0.007227 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.749051 B = 3873.486156 C = 4228.780843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 H 0.050 0.950 4 C 0.032 3.968 5 C -0.531 4.531 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C -0.076 4.076 14 H 0.053 0.947 15 C -0.116 4.116 16 C -0.147 4.147 17 C 0.057 3.943 18 O -0.415 6.415 19 C 0.071 3.929 20 C -0.148 4.148 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.071 0.929 24 H -0.016 1.016 25 H -0.001 1.001 26 H 0.261 0.739 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 2.638 -14.149 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.094 4.094 14 H 0.071 0.929 15 C -0.153 4.153 16 C -0.185 4.185 17 C -0.018 4.018 18 O -0.336 6.336 19 C -0.005 4.005 20 C -0.186 4.186 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.002 0.998 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.569 2.487 -14.129 14.432 hybrid contribution -0.224 0.173 1.550 1.576 sum -1.793 2.661 -12.578 12.981 Atomic orbital electron populations 1.21752 0.95242 1.00774 1.00983 1.21129 0.95933 0.98353 0.94127 0.93174 1.19107 0.94819 0.94139 0.92439 1.21711 1.34162 1.08654 0.92370 0.92384 1.25914 0.95349 0.96085 1.02522 1.70095 1.40266 1.22997 1.24164 0.85565 0.78005 0.79308 0.78895 1.19958 1.20950 1.18878 1.20214 0.94332 0.99588 0.95266 0.92866 1.20798 1.01471 0.99780 0.93263 1.21918 0.97209 1.01046 0.98316 1.22487 0.87238 0.92828 0.99272 1.88173 1.47962 1.67718 1.29724 1.22249 1.01394 0.95421 0.81471 1.22007 0.96352 1.00010 1.00189 0.94112 0.94071 0.91034 0.99750 0.98287 0.93015 0.90535 0.91766 0.91676 0.88210 0.87914 0.93301 0.93184 0.89543 0.91100 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.43 71.98 0.61 -4.10 16 2 C -0.08 -3.07 1.90 -10.79 -0.02 -3.09 16 3 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.03 1.65 4.31 29.85 0.13 1.78 16 5 C -0.53 -30.04 8.40 25.60 0.22 -29.83 16 6 H 0.06 3.17 7.04 -2.91 -0.02 3.15 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 C -0.08 -2.47 1.38 -12.45 -0.02 -2.49 16 14 H 0.05 1.85 7.55 -2.39 -0.02 1.83 16 15 C -0.12 -2.94 4.17 28.93 0.12 -2.82 16 16 C -0.15 -3.12 5.61 30.16 0.17 -2.95 16 17 C 0.06 1.29 6.27 71.15 0.45 1.74 16 18 O -0.42 -11.94 10.88 -148.98 -1.62 -13.56 16 19 C 0.07 2.09 6.27 71.16 0.45 2.54 16 20 C -0.15 -4.89 4.90 30.19 0.15 -4.74 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.04 1.62 6.94 -2.39 -0.02 1.60 16 23 H 0.07 2.05 6.27 -2.39 -0.01 2.04 16 24 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 25 H 0.00 -0.06 5.96 -2.39 -0.01 -0.07 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.08 1.82 5.98 -2.39 -0.01 1.81 16 28 H 0.06 1.58 7.56 -2.38 -0.02 1.56 16 29 H 0.06 1.51 7.15 -2.39 -0.02 1.49 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.11 6.66 -2.38 -0.02 1.09 16 33 H 0.05 1.46 6.67 -2.39 -0.02 1.44 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.24 7.14 -2.39 -0.02 2.22 16 36 H 0.06 2.51 5.76 -2.39 -0.01 2.50 16 Total: -1.00 -63.60 269.98 4.43 -59.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.04 Total: 8.24 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 2.71 Total: -43.59 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.28 Total: -56.95 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -1.62 Total: -13.56 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.60 4.43 -59.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.493 kcal (2) G-P(sol) polarization free energy of solvation -63.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds