Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47388 * 2 1 4 4 C 1.52999 * 109.47184 * 120.00573 * 2 1 3 5 5 C 1.50703 * 109.46836 * 294.99608 * 4 2 1 6 6 H 1.07996 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99880 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00160 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47260 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47236 * 119.99882 * 9 7 5 12 12 H 1.48504 * 109.46739 * 239.99497 * 9 7 5 13 13 C 1.52997 * 109.46726 * 240.00219 * 2 1 3 14 14 H 1.09008 * 109.55745 * 300.04024 * 13 2 1 15 15 C 1.50978 * 109.51372 * 60.16997 * 13 2 1 16 16 C 1.54153 * 112.81223 * 212.24842 * 15 13 2 17 17 C 1.53471 * 111.65984 * 318.38527 * 16 15 13 18 18 C 1.51076 * 111.29490 * 319.24391 * 17 16 15 19 19 O 1.43392 * 107.46005 * 94.48412 * 18 17 16 20 20 C 1.36327 * 118.03408 * 276.35028 * 19 18 17 21 21 H 1.09008 * 109.46609 * 293.31456 * 1 2 3 22 22 H 1.08996 * 109.47290 * 53.30821 * 1 2 3 23 23 H 1.08991 * 109.47249 * 173.31897 * 1 2 3 24 24 H 1.08996 * 109.47325 * 54.99149 * 4 2 1 25 25 H 1.09001 * 109.47041 * 175.00043 * 4 2 1 26 26 H 0.96997 * 120.00095 * 180.02562 * 8 7 5 27 27 H 1.09000 * 108.81326 * 333.10249 * 15 13 2 28 28 H 1.08997 * 108.81257 * 91.49924 * 15 13 2 29 29 H 1.09004 * 109.04043 * 197.82933 * 16 15 13 30 30 H 1.09001 * 109.04555 * 78.94897 * 16 15 13 31 31 H 1.09003 * 109.11062 * 198.77634 * 17 16 15 32 32 H 1.08997 * 109.11514 * 79.71541 * 17 16 15 33 33 H 1.09001 * 109.85559 * 213.96699 * 18 17 16 34 34 H 1.08996 * 109.86053 * 334.99233 * 18 17 16 35 35 H 1.09000 * 109.15951 * 182.30045 * 20 19 18 36 36 H 1.09000 * 109.15479 * 301.53155 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0808 0.9745 2.3757 7 6 1.9934 -0.4019 3.7282 8 7 2.6765 -1.5190 3.8510 9 14 1.4986 0.5625 5.2497 10 1 0.7414 1.7735 4.8436 11 1 0.6453 -0.2873 6.1186 12 1 2.7166 0.9679 5.9964 13 6 2.0399 -0.7212 -1.2493 14 1 1.6767 -1.7490 -1.2511 15 6 1.5406 -0.0077 -2.4826 16 6 1.2886 -0.9638 -3.6653 17 6 2.3984 -2.0165 -3.7891 18 6 3.7599 -1.4101 -3.5418 19 8 4.0761 -1.6126 -2.1579 20 6 3.5862 -0.7200 -1.2514 21 1 -0.3633 0.4068 0.9438 22 1 -0.3634 0.6140 -0.8240 23 1 -0.3633 -1.0206 -0.1195 24 1 1.6054 -1.7198 1.2951 25 1 3.1264 -0.7996 1.2055 26 1 2.9237 -1.8419 4.7316 27 1 0.6094 0.5041 -2.2398 28 1 2.2807 0.7337 -2.7835 29 1 1.2434 -0.3844 -4.5875 30 1 0.3341 -1.4690 -3.5171 31 1 2.3748 -2.4438 -4.7917 32 1 2.2225 -2.8080 -3.0608 33 1 4.5039 -1.9030 -4.1675 34 1 3.7360 -0.3433 -3.7639 35 1 3.9455 -0.9859 -0.2573 36 1 3.9419 0.2787 -1.5048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260552465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -75.858258 kcal Electronic energy + Delta-G solvation = -14916.973241 eV Core-core repulsion = 12593.078104 eV Total energy + Delta-G solvation = -2323.895138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.67190 -36.00996 -34.15399 -32.46841 -30.11727 -27.25082 -26.47792 -24.97234 -23.24189 -21.55369 -19.60891 -18.79008 -16.55758 -16.10720 -15.77898 -15.02502 -14.54104 -14.38578 -13.51225 -13.36567 -13.17810 -12.40162 -11.93920 -11.89108 -11.51100 -11.47150 -10.94630 -10.87256 -10.86417 -10.60101 -10.46079 -10.26178 -10.10237 -9.81682 -9.56274 -9.09189 -8.94649 -8.75561 -8.28441 -5.95299 -3.96540 3.32975 3.40724 3.44330 4.18824 4.49277 4.91970 5.07457 5.13741 5.24467 5.36454 5.39748 5.53967 5.68671 5.82191 5.92668 5.95161 6.00169 6.12583 6.19045 6.27535 6.33979 6.42045 6.46179 6.59664 6.68883 6.74239 7.08761 7.14255 7.24615 7.74000 7.89140 7.99902 8.05536 8.48957 9.10225 9.66672 11.15886 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050593 B = 0.007402 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.305322 B = 3781.722864 C = 4125.480745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.025 3.975 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.120 4.120 14 H 0.073 0.927 15 C -0.125 4.125 16 C -0.117 4.117 17 C -0.153 4.153 18 C 0.065 3.935 19 O -0.384 6.384 20 C 0.073 3.927 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.016 0.984 25 H 0.020 0.980 26 H 0.259 0.741 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.110 0.890 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 1.408 -13.938 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.012 4.012 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.139 4.139 14 H 0.091 0.909 15 C -0.162 4.162 16 C -0.155 4.155 17 C -0.190 4.190 18 C -0.011 4.011 19 O -0.302 6.302 20 C -0.005 4.005 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.688 1.155 -13.759 13.824 hybrid contribution -0.526 0.730 0.825 1.221 sum -1.214 1.885 -12.933 13.126 Atomic orbital electron populations 1.21790 0.96482 1.00224 1.00643 1.21153 0.94972 0.99008 0.94658 0.92711 1.19225 0.96185 0.95491 0.90283 1.21309 1.34603 1.08267 0.91125 0.92628 1.25020 0.95365 0.95078 0.99051 1.69974 1.39052 1.21163 1.23252 0.86604 0.78257 0.80121 0.83425 1.19829 1.21116 1.21099 1.21912 0.96407 1.00571 0.95003 0.90873 1.21688 1.01763 0.98119 0.94619 1.21853 0.98435 0.97159 0.98016 1.22002 0.95589 0.99539 1.01895 1.22384 0.95764 0.99815 0.83109 1.86366 1.74695 1.53594 1.15529 1.22117 0.93087 0.91889 0.93379 0.91767 0.94834 0.93891 0.96604 0.96167 0.93146 0.91244 0.93074 0.92736 0.92272 0.91948 0.90550 0.89794 0.93007 0.87219 0.95415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.68 37.16 0.32 -2.22 16 2 C -0.08 -1.61 1.90 -90.62 -0.17 -1.79 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.02 0.63 4.27 -27.88 -0.12 0.52 16 5 C -0.51 -14.40 8.31 -34.44 -0.29 -14.68 16 6 H 0.06 1.52 7.09 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.12 -2.10 1.52 -90.78 -0.14 -2.24 16 14 H 0.07 1.37 7.16 -51.92 -0.37 1.00 16 15 C -0.12 -1.80 4.73 -27.14 -0.13 -1.93 16 16 C -0.12 -1.45 5.93 -25.88 -0.15 -1.60 16 17 C -0.15 -1.88 5.43 -27.45 -0.15 -2.03 16 18 C 0.07 0.85 6.48 36.19 0.23 1.08 16 19 O -0.38 -6.50 9.91 -20.79 -0.21 -6.71 16 20 C 0.07 1.29 5.68 38.01 0.22 1.50 16 21 H 0.06 1.32 6.79 -51.92 -0.35 0.97 16 22 H 0.03 0.54 6.27 -51.93 -0.33 0.21 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.54 5.91 -51.93 -0.31 0.24 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.07 1.00 5.54 -51.93 -0.29 0.72 16 28 H 0.05 0.71 6.59 -51.93 -0.34 0.37 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.07 7.31 -51.93 -0.38 0.69 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.64 6.67 -51.93 -0.35 0.29 16 35 H 0.11 2.21 5.71 -51.93 -0.30 1.92 16 36 H 0.03 0.46 7.68 -51.93 -0.40 0.07 16 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -29.58 270.47 -6.76 -36.34 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.87 Total: -2.28 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.47 Total: -21.90 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.21 Total: -6.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.58 -6.76 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.515 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds