Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47388 * 2 1 4 4 C 1.52999 * 109.47184 * 120.00573 * 2 1 3 5 5 C 1.50703 * 109.46836 * 294.99608 * 4 2 1 6 6 H 1.07996 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99880 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00160 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47260 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47236 * 119.99882 * 9 7 5 12 12 H 1.48504 * 109.46739 * 239.99497 * 9 7 5 13 13 C 1.52997 * 109.46726 * 240.00219 * 2 1 3 14 14 H 1.09008 * 109.55745 * 300.04024 * 13 2 1 15 15 C 1.50978 * 109.51372 * 60.16997 * 13 2 1 16 16 C 1.54153 * 112.81223 * 212.24842 * 15 13 2 17 17 C 1.53471 * 111.65984 * 318.38527 * 16 15 13 18 18 C 1.51076 * 111.29490 * 319.24391 * 17 16 15 19 19 O 1.43392 * 107.46005 * 94.48412 * 18 17 16 20 20 C 1.36327 * 118.03408 * 276.35028 * 19 18 17 21 21 H 1.09008 * 109.46609 * 293.31456 * 1 2 3 22 22 H 1.08996 * 109.47290 * 53.30821 * 1 2 3 23 23 H 1.08991 * 109.47249 * 173.31897 * 1 2 3 24 24 H 1.08996 * 109.47325 * 54.99149 * 4 2 1 25 25 H 1.09001 * 109.47041 * 175.00043 * 4 2 1 26 26 H 0.96997 * 120.00095 * 180.02562 * 8 7 5 27 27 H 1.09000 * 108.81326 * 333.10249 * 15 13 2 28 28 H 1.08997 * 108.81257 * 91.49924 * 15 13 2 29 29 H 1.09004 * 109.04043 * 197.82933 * 16 15 13 30 30 H 1.09001 * 109.04555 * 78.94897 * 16 15 13 31 31 H 1.09003 * 109.11062 * 198.77634 * 17 16 15 32 32 H 1.08997 * 109.11514 * 79.71541 * 17 16 15 33 33 H 1.09001 * 109.85559 * 213.96699 * 18 17 16 34 34 H 1.08996 * 109.86053 * 334.99233 * 18 17 16 35 35 H 1.09000 * 109.15951 * 182.30045 * 20 19 18 36 36 H 1.09000 * 109.15479 * 301.53155 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0808 0.9745 2.3757 7 6 1.9934 -0.4019 3.7282 8 7 2.6765 -1.5190 3.8510 9 14 1.4986 0.5625 5.2497 10 1 0.7414 1.7735 4.8436 11 1 0.6453 -0.2873 6.1186 12 1 2.7166 0.9679 5.9964 13 6 2.0399 -0.7212 -1.2493 14 1 1.6767 -1.7490 -1.2511 15 6 1.5406 -0.0077 -2.4826 16 6 1.2886 -0.9638 -3.6653 17 6 2.3984 -2.0165 -3.7891 18 6 3.7599 -1.4101 -3.5418 19 8 4.0761 -1.6126 -2.1579 20 6 3.5862 -0.7200 -1.2514 21 1 -0.3633 0.4068 0.9438 22 1 -0.3634 0.6140 -0.8240 23 1 -0.3633 -1.0206 -0.1195 24 1 1.6054 -1.7198 1.2951 25 1 3.1264 -0.7996 1.2055 26 1 2.9237 -1.8419 4.7316 27 1 0.6094 0.5041 -2.2398 28 1 2.2807 0.7337 -2.7835 29 1 1.2434 -0.3844 -4.5875 30 1 0.3341 -1.4690 -3.5171 31 1 2.3748 -2.4438 -4.7917 32 1 2.2225 -2.8080 -3.0608 33 1 4.5039 -1.9030 -4.1675 34 1 3.7360 -0.3433 -3.7639 35 1 3.9455 -0.9859 -0.2573 36 1 3.9419 0.2787 -1.5048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = -92.873223 kcal Electronic energy + Delta-G solvation = -14917.711065 eV Core-core repulsion = 12593.078104 eV Total energy + Delta-G solvation = -2324.632962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96305 -37.57289 -35.46412 -34.39755 -31.63136 -29.04455 -27.84379 -26.22377 -25.12324 -22.94367 -21.02977 -20.18693 -18.53431 -17.40257 -17.21107 -16.61096 -16.18794 -15.57352 -15.06885 -14.79772 -14.54686 -14.14089 -13.55897 -13.20232 -13.15500 -12.94933 -12.75005 -12.61780 -12.25475 -12.15599 -11.96931 -11.55213 -11.51572 -11.39532 -11.08473 -10.83772 -10.70287 -10.48985 -10.19958 -8.16042 -6.25326 1.39536 1.39854 1.52760 2.42317 2.98278 3.17101 3.81132 3.93131 4.02821 4.10884 4.15144 4.33711 4.47349 4.53898 4.62637 4.70333 4.75464 4.88529 4.93527 4.97155 5.03527 5.18512 5.21656 5.27435 5.32956 5.39585 5.46699 5.50482 5.54540 5.66817 5.86723 5.92399 6.31324 6.74443 6.92107 7.42718 8.95883 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050593 B = 0.007402 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.305322 B = 3781.722864 C = 4125.480745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.031 3.969 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C -0.110 4.110 14 H 0.055 0.945 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.152 4.152 18 C 0.058 3.942 19 O -0.406 6.406 20 C 0.080 3.920 21 H 0.044 0.956 22 H 0.069 0.931 23 H 0.039 0.961 24 H -0.018 1.018 25 H -0.002 1.002 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 2.792 -15.579 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.129 4.129 14 H 0.074 0.926 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.189 4.189 18 C -0.017 4.017 19 O -0.325 6.325 20 C 0.002 3.998 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.000 1.000 25 H 0.016 0.984 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.529 2.547 -15.418 15.702 hybrid contribution -0.221 0.248 1.284 1.326 sum -1.750 2.795 -14.135 14.514 Atomic orbital electron populations 1.21718 0.95072 1.00686 1.01051 1.21019 0.96107 0.98422 0.93601 0.92666 1.19110 0.94694 0.94183 0.92638 1.21725 1.34289 1.08526 0.92208 0.92086 1.25959 0.95330 0.96091 1.02662 1.70118 1.40377 1.22972 1.24142 0.85470 0.78057 0.78896 0.79064 1.18506 1.20639 1.20569 1.21763 0.96169 0.99604 0.95377 0.92619 1.21634 1.01999 0.98481 0.93747 1.21851 0.98363 0.96930 0.98003 1.21986 0.95173 0.98951 1.02810 1.22706 0.96959 1.01140 0.80864 1.86318 1.74943 1.53692 1.17507 1.21856 0.93194 0.92425 0.92290 0.93717 0.91232 0.94170 0.99984 0.98425 0.93015 0.90773 0.92052 0.90016 0.92145 0.89055 0.92989 0.87489 0.91702 0.91039 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.68 71.98 0.62 -4.14 16 2 C -0.07 -2.99 1.90 -10.79 -0.02 -3.01 16 3 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.03 1.63 4.27 29.85 0.13 1.76 16 5 C -0.53 -30.26 8.31 25.60 0.21 -30.05 16 6 H 0.06 3.35 7.09 -2.91 -0.02 3.33 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.89 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C -0.11 -3.84 1.52 -10.90 -0.02 -3.86 16 14 H 0.06 2.13 7.16 -2.38 -0.02 2.11 16 15 C -0.12 -3.20 4.73 30.33 0.14 -3.06 16 16 C -0.11 -2.44 5.93 31.14 0.18 -2.25 16 17 C -0.15 -3.36 5.43 30.13 0.16 -3.19 16 18 C 0.06 1.38 6.48 71.36 0.46 1.84 16 19 O -0.41 -13.69 9.91 -97.30 -0.96 -14.65 16 20 C 0.08 2.89 5.68 72.54 0.41 3.31 16 21 H 0.04 1.81 6.79 -2.38 -0.02 1.80 16 22 H 0.07 2.07 6.27 -2.39 -0.01 2.06 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 25 H 0.00 -0.14 5.91 -2.39 -0.01 -0.15 16 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.07 1.89 5.54 -2.39 -0.01 1.88 16 28 H 0.06 1.51 6.59 -2.39 -0.02 1.49 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.42 7.31 -2.39 -0.02 1.40 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.38 6.67 -2.39 -0.02 1.36 16 35 H 0.07 3.10 5.71 -2.39 -0.01 3.08 16 36 H 0.04 1.32 7.68 -2.39 -0.02 1.30 16 Total: -1.00 -65.37 270.47 5.14 -60.23 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.04 Total: 7.67 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 2.76 Total: -42.39 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.28 Total: -57.89 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.96 Total: -14.65 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.37 5.14 -60.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds