Wall clock time and date at job start Mon Mar 30 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47643 * 2 1 4 4 C 1.53003 * 109.47083 * 119.99993 * 2 1 3 5 5 C 1.50695 * 109.47144 * 295.41815 * 4 2 1 6 6 H 1.08001 * 119.99972 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00269 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99545 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00475 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46841 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47227 * 119.99801 * 9 7 5 12 12 H 1.48501 * 109.47484 * 240.00188 * 9 7 5 13 13 C 1.53002 * 109.47348 * 239.99727 * 2 1 3 14 14 H 1.09000 * 109.59191 * 299.30131 * 13 2 1 15 15 C 1.54202 * 109.58767 * 179.01030 * 13 2 1 16 16 C 1.46294 * 112.07269 * 162.40373 * 15 13 2 17 17 C 1.54207 * 112.06322 * 60.89246 * 16 15 13 18 18 C 1.50409 * 108.89668 * 282.12900 * 17 16 15 19 19 O 1.44340 * 112.68853 * 92.41392 * 18 17 16 20 20 C 1.44188 * 117.03200 * 318.69580 * 19 18 17 21 21 H 1.08996 * 109.47486 * 292.73482 * 1 2 3 22 22 H 1.09001 * 109.46942 * 52.74147 * 1 2 3 23 23 H 1.09003 * 109.47028 * 172.73556 * 1 2 3 24 24 H 1.09006 * 109.47072 * 55.41571 * 4 2 1 25 25 H 1.09004 * 109.47441 * 175.41164 * 4 2 1 26 26 H 0.97003 * 120.00039 * 179.97438 * 8 7 5 27 27 H 1.08990 * 108.96185 * 41.73764 * 15 13 2 28 28 H 1.08997 * 108.89273 * 283.02065 * 15 13 2 29 29 H 1.09001 * 108.96000 * 300.22651 * 16 15 13 30 30 H 1.08993 * 108.89104 * 181.51583 * 16 15 13 31 31 H 1.08998 * 109.58845 * 41.99871 * 17 16 15 32 32 H 1.09001 * 109.57857 * 162.27569 * 17 16 15 33 33 H 1.08997 * 108.82442 * 213.49883 * 18 17 16 34 34 H 1.09006 * 108.82091 * 331.80125 * 18 17 16 35 35 H 1.08993 * 108.82356 * 197.54197 * 20 19 18 36 36 H 1.09000 * 108.73115 * 79.18328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6324 0.0516 2.4771 6 1 1.0667 0.9661 2.3764 7 6 1.9818 -0.4086 3.7289 8 7 2.6704 -1.5224 3.8514 9 14 1.4774 0.5498 5.2509 10 1 0.7151 1.7579 4.8449 11 1 0.6247 -0.3059 6.1146 12 1 2.6907 0.9590 6.0030 13 6 2.0400 -0.7213 -1.2492 14 1 1.6880 -1.7529 -1.2449 15 6 3.5818 -0.7012 -1.2645 16 6 4.1357 -1.7003 -2.1783 17 6 3.6915 -1.4618 -3.6356 18 6 2.2801 -1.9545 -3.8016 19 8 1.2992 -0.9190 -3.5800 20 6 1.5345 -0.0182 -2.4791 21 1 -0.3634 0.3971 0.9478 22 1 -0.3633 0.6222 -0.8179 23 1 -0.3633 -1.0194 -0.1300 24 1 1.6111 -1.7225 1.2913 25 1 3.1269 -0.7930 1.2092 26 1 2.9165 -1.8460 4.7321 27 1 3.9486 -0.9002 -0.2576 28 1 3.9188 0.2879 -1.5748 29 1 3.8038 -2.6900 -1.8643 30 1 5.2237 -1.6596 -2.1284 31 1 3.7355 -0.3963 -3.8614 32 1 4.3504 -2.0061 -4.3121 33 1 2.1611 -2.3472 -4.8114 34 1 2.1032 -2.7610 -3.0898 35 1 0.6018 0.4903 -2.2352 36 1 2.2699 0.7254 -2.7863 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260552469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:13 Heat of formation + Delta-G solvation = -76.456666 kcal Electronic energy + Delta-G solvation = -14911.361732 eV Core-core repulsion = 12587.440645 eV Total energy + Delta-G solvation = -2323.921087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42758 -35.80292 -34.15595 -32.55148 -30.21923 -27.67068 -26.11885 -25.33382 -23.12857 -20.54849 -20.32976 -18.85047 -16.66250 -16.18848 -15.72850 -14.70598 -14.43586 -14.06896 -13.56963 -13.38339 -13.03488 -12.56555 -12.30891 -11.90131 -11.51843 -11.38231 -11.16021 -10.90697 -10.75913 -10.60346 -10.38450 -10.35696 -10.03769 -9.83720 -9.59035 -9.29410 -8.93639 -8.83521 -8.30715 -5.98085 -3.98905 3.31428 3.39274 3.43029 4.03339 4.47368 4.89146 4.96292 5.13637 5.23813 5.37184 5.41185 5.55169 5.68274 5.84641 5.89116 5.94747 6.04696 6.11146 6.14642 6.27982 6.35622 6.44013 6.51174 6.60665 6.68082 6.75749 7.03616 7.13099 7.21528 7.51187 7.72481 7.87381 8.02884 8.46502 9.07799 9.64360 11.13238 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050805 B = 0.007371 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.997701 B = 3798.001325 C = 4144.028041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.112 4.112 14 H 0.073 0.927 15 C -0.127 4.127 16 C -0.117 4.117 17 C -0.154 4.154 18 C 0.064 3.936 19 O -0.401 6.401 20 C 0.064 3.936 21 H 0.065 0.935 22 H 0.034 0.966 23 H 0.044 0.956 24 H 0.014 0.986 25 H 0.021 0.979 26 H 0.259 0.741 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 0.459 -12.569 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.131 4.131 14 H 0.092 0.908 15 C -0.164 4.164 16 C -0.155 4.155 17 C -0.192 4.192 18 C -0.012 4.012 19 O -0.321 6.321 20 C -0.012 4.012 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.892 0.365 -12.549 12.585 hybrid contribution 0.102 0.381 1.148 1.214 sum 0.994 0.746 -11.401 11.468 Atomic orbital electron populations 1.21831 0.96371 1.00423 1.00861 1.21156 0.94908 0.99116 0.94565 0.92505 1.19204 0.96279 0.95356 0.90148 1.21317 1.34255 1.08572 0.91085 0.92573 1.25016 0.95363 0.95082 0.99073 1.69975 1.39037 1.21352 1.23238 0.86595 0.78282 0.80115 0.83372 1.19776 1.21108 1.21113 1.21570 0.95181 1.00832 0.95486 0.90841 1.20825 0.95550 0.98746 1.01242 1.20658 1.00410 1.00331 0.94091 1.21957 0.97034 1.02403 0.97776 1.22258 0.87972 0.90313 1.00681 1.88206 1.47981 1.44991 1.50917 1.22620 1.01560 0.91196 0.85788 0.91572 0.94711 0.93725 0.96753 0.96058 0.93177 0.89762 0.92775 0.91980 0.92287 0.91057 0.91173 0.90333 0.93202 0.89027 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.66 37.15 0.32 -2.30 16 2 C -0.08 -1.59 1.90 -90.62 -0.17 -1.76 16 3 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.03 0.68 4.29 -27.88 -0.12 0.56 16 5 C -0.51 -14.26 8.30 -34.44 -0.29 -14.55 16 6 H 0.06 1.52 7.07 -52.49 -0.37 1.15 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C -0.11 -1.94 1.45 -91.28 -0.13 -2.07 16 14 H 0.07 1.35 7.17 -51.93 -0.37 0.98 16 15 C -0.13 -2.06 4.67 -29.29 -0.14 -2.19 16 16 C -0.12 -1.61 5.33 -29.29 -0.16 -1.77 16 17 C -0.15 -1.87 5.60 -27.39 -0.15 -2.02 16 18 C 0.06 0.84 6.28 35.86 0.23 1.07 16 19 O -0.40 -6.36 10.88 -35.23 -0.38 -6.74 16 20 C 0.06 1.00 5.70 35.87 0.20 1.21 16 21 H 0.07 1.36 6.74 -51.93 -0.35 1.01 16 22 H 0.03 0.56 6.29 -51.93 -0.33 0.24 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.56 5.92 -51.93 -0.31 0.26 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.08 1.58 5.66 -51.93 -0.29 1.29 16 28 H 0.05 0.83 7.55 -51.93 -0.39 0.44 16 29 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.89 7.15 -51.93 -0.37 0.52 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.68 6.69 -51.93 -0.35 0.33 16 35 H 0.09 1.42 5.52 -51.93 -0.29 1.14 16 36 H 0.04 0.62 6.67 -51.93 -0.35 0.28 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -29.38 269.82 -6.93 -36.32 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.83 Total: -1.85 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -0.50 Total: -22.35 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.38 Total: -6.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.38 -6.93 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.141 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds