Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46887 * 2 1 4 4 H 1.09002 * 109.46687 * 182.32187 * 3 2 1 5 5 C 1.52991 * 109.47217 * 62.32005 * 3 2 1 6 6 C 1.50709 * 109.47266 * 64.99825 * 5 3 2 7 7 H 1.07999 * 119.99651 * 0.02562 * 6 5 3 8 8 C 1.37879 * 119.99882 * 179.97438 * 6 5 3 9 9 N 1.31516 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99629 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47460 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46932 * 120.00361 * 10 8 6 13 13 H 1.48501 * 109.47200 * 240.00238 * 10 8 6 14 14 C 1.52999 * 109.47080 * 302.31929 * 3 2 1 15 15 H 1.08996 * 109.52440 * 65.06371 * 14 3 2 16 16 C 1.53174 * 109.52073 * 185.19369 * 14 3 2 17 17 C 1.53179 * 109.03648 * 176.88755 * 16 14 3 18 18 C 1.53099 * 109.16312 * 303.01697 * 17 16 14 19 19 O 1.42908 * 109.41344 * 57.60489 * 18 17 16 20 20 C 1.42901 * 114.10049 * 298.84554 * 19 18 17 21 21 H 1.08998 * 109.47043 * 296.74021 * 1 2 3 22 22 H 1.08998 * 109.46786 * 56.74059 * 1 2 3 23 23 H 1.08994 * 109.47167 * 176.73854 * 1 2 3 24 24 H 1.08998 * 109.46931 * 119.99874 * 2 1 3 25 25 H 1.08998 * 109.47006 * 239.99937 * 2 1 3 26 26 H 1.09005 * 109.47269 * 184.99572 * 5 3 2 27 27 H 1.09003 * 109.47294 * 305.00006 * 5 3 2 28 28 H 0.97001 * 119.99584 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.54369 * 296.75182 * 16 14 3 30 30 H 1.09001 * 109.54863 * 57.01907 * 16 14 3 31 31 H 1.09001 * 109.52188 * 62.92015 * 17 16 14 32 32 H 1.09000 * 109.52737 * 183.11263 * 17 16 14 33 33 H 1.08997 * 109.48088 * 177.58875 * 18 17 16 34 34 H 1.09004 * 109.47856 * 297.62765 * 18 17 16 35 35 H 1.08995 * 109.47959 * 301.17523 * 20 19 18 36 36 H 1.09001 * 109.47991 * 181.13856 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 -0.0416 5 6 1.5783 2.1467 1.2773 6 6 2.2254 1.4951 2.4723 7 1 2.8991 0.6622 2.3343 8 6 1.9583 1.9628 3.7415 9 7 1.1384 2.9773 3.9094 10 14 2.7599 1.1546 5.2225 11 1 3.6329 0.0427 4.7677 12 1 3.5765 2.1577 5.9523 13 1 1.7081 0.6213 6.1251 14 6 1.4829 2.1804 -1.2190 15 1 0.3992 2.2592 -1.1332 16 6 2.0940 3.5831 -1.2917 17 6 1.5892 4.2831 -2.5572 18 6 1.9440 3.4308 -3.7785 19 8 1.3709 2.1298 -3.6326 20 6 1.8419 1.4093 -2.4920 21 1 -0.3633 0.4624 0.9177 22 1 -0.3633 0.5636 -0.8593 23 1 -0.3633 -1.0259 -0.0585 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8651 3.1976 1.2369 27 1 0.4945 2.0689 1.3637 28 1 0.9502 3.3061 4.8024 29 1 1.7958 4.1567 -0.4141 30 1 3.1808 3.5061 -1.3265 31 1 0.5075 4.4043 -2.4995 32 1 2.0620 5.2612 -2.6459 33 1 1.5496 3.9029 -4.6783 34 1 3.0276 3.3437 -3.8585 35 1 2.9241 1.2958 -2.5552 36 1 1.3739 0.4252 -2.4650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260575242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = -83.625245 kcal Electronic energy + Delta-G solvation = -14969.242445 eV Core-core repulsion = 12645.010505 eV Total energy + Delta-G solvation = -2324.231939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35513 -36.28753 -32.89786 -32.46427 -30.08185 -28.59620 -25.20699 -24.65229 -22.93746 -22.16192 -20.08021 -18.21945 -16.43437 -15.84433 -15.68809 -14.60799 -14.47932 -14.13999 -13.79417 -13.52523 -12.79626 -12.36241 -12.29582 -11.68424 -11.63495 -11.35928 -11.17432 -10.87420 -10.80296 -10.62251 -10.35916 -10.22256 -9.97418 -9.75308 -9.51560 -9.39997 -8.85573 -8.70962 -8.29548 -5.97062 -3.97634 3.31456 3.39441 3.42979 4.13552 4.48042 5.10411 5.18053 5.19858 5.36256 5.38997 5.48641 5.70506 5.76058 5.85940 5.91439 5.94468 6.00620 6.06256 6.27593 6.34056 6.36501 6.54531 6.62113 6.66895 6.75810 6.92807 7.01153 7.14334 7.27633 7.46617 7.75074 7.89127 8.05023 8.47915 9.09102 9.65501 11.14174 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.043539 B = 0.007992 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.951786 B = 3502.828990 C = 3838.278752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.076 4.076 4 H 0.054 0.946 5 C 0.026 3.974 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.118 4.118 17 C -0.156 4.156 18 C 0.062 3.938 19 O -0.390 6.390 20 C 0.063 3.937 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.017 0.983 27 H 0.021 0.979 28 H 0.258 0.742 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -0.646 -11.717 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.094 4.094 4 H 0.073 0.927 5 C -0.010 4.010 6 C -0.550 4.550 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.155 4.155 17 C -0.194 4.194 18 C -0.015 4.015 19 O -0.309 6.309 20 C -0.013 4.013 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.831 -0.618 -11.711 11.756 hybrid contribution 0.633 -0.196 1.213 1.382 sum 1.464 -0.814 -10.497 10.630 Atomic orbital electron populations 1.21838 0.96744 0.99887 1.02338 1.21473 0.95698 0.97179 1.00403 1.21209 0.98742 0.94324 0.95155 0.92737 1.19209 0.96784 0.95264 0.89775 1.21302 1.26659 1.15812 0.91251 0.92705 1.25002 0.95391 0.95137 0.98960 1.69974 1.35979 1.25611 1.22020 0.86624 0.79287 0.79416 0.83198 1.19821 1.21161 1.21119 1.21871 1.01335 0.95012 0.95188 0.90542 1.21674 0.99946 0.96429 0.97455 1.22211 1.02074 0.98982 0.96097 1.22518 0.97225 0.83975 0.97793 1.87876 1.68173 1.28300 1.46560 1.22814 0.98225 0.95302 0.84950 0.91392 0.93443 0.94407 0.91230 0.94333 0.96512 0.96101 0.93211 0.90428 0.92378 0.91339 0.91500 0.89686 0.93705 0.93767 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.15 37.16 0.34 -2.34 16 2 C -0.11 -2.03 5.01 -26.72 -0.13 -2.16 16 3 C -0.08 -1.50 1.70 -90.62 -0.15 -1.66 16 4 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 5 C 0.03 0.66 4.14 -27.88 -0.12 0.54 16 6 C -0.51 -14.08 8.37 -34.43 -0.29 -14.37 16 7 H 0.05 1.48 7.06 -52.49 -0.37 1.11 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C -0.12 -1.99 1.40 -90.48 -0.13 -2.12 16 15 H 0.08 1.41 6.61 -51.93 -0.34 1.06 16 16 C -0.12 -1.93 4.99 -26.55 -0.13 -2.07 16 17 C -0.16 -2.13 6.14 -26.59 -0.16 -2.29 16 18 C 0.06 0.80 6.84 37.21 0.25 1.06 16 19 O -0.39 -6.09 10.77 -35.23 -0.38 -6.47 16 20 C 0.06 0.98 5.53 37.21 0.21 1.18 16 21 H 0.07 1.38 6.55 -51.93 -0.34 1.04 16 22 H 0.05 0.79 6.18 -51.93 -0.32 0.47 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 25 H 0.04 0.61 6.55 -51.93 -0.34 0.27 16 26 H 0.02 0.44 6.43 -51.93 -0.33 0.11 16 27 H 0.02 0.55 6.32 -51.93 -0.33 0.22 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.08 1.42 6.63 -51.93 -0.34 1.08 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.39 6.38 -51.93 -0.33 1.06 16 LS Contribution 272.69 15.07 4.11 4.11 Total: -1.00 -29.17 272.69 -6.89 -36.06 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.93 Total: -1.59 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -0.41 Total: -22.75 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.38 Total: -6.47 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.17 -6.89 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.562 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds