Wall clock time and date at job start Mon Mar 30 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46887 * 2 1 4 4 H 1.09002 * 109.46687 * 182.32187 * 3 2 1 5 5 C 1.52991 * 109.47217 * 62.32005 * 3 2 1 6 6 C 1.50709 * 109.47266 * 64.99825 * 5 3 2 7 7 H 1.07999 * 119.99651 * 0.02562 * 6 5 3 8 8 C 1.37879 * 119.99882 * 179.97438 * 6 5 3 9 9 N 1.31516 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99629 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47460 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46932 * 120.00361 * 10 8 6 13 13 H 1.48501 * 109.47200 * 240.00238 * 10 8 6 14 14 C 1.52999 * 109.47080 * 302.31929 * 3 2 1 15 15 H 1.08996 * 109.52440 * 65.06371 * 14 3 2 16 16 C 1.53174 * 109.52073 * 185.19369 * 14 3 2 17 17 C 1.53179 * 109.03648 * 176.88755 * 16 14 3 18 18 C 1.53099 * 109.16312 * 303.01697 * 17 16 14 19 19 O 1.42908 * 109.41344 * 57.60489 * 18 17 16 20 20 C 1.42901 * 114.10049 * 298.84554 * 19 18 17 21 21 H 1.08998 * 109.47043 * 296.74021 * 1 2 3 22 22 H 1.08998 * 109.46786 * 56.74059 * 1 2 3 23 23 H 1.08994 * 109.47167 * 176.73854 * 1 2 3 24 24 H 1.08998 * 109.46931 * 119.99874 * 2 1 3 25 25 H 1.08998 * 109.47006 * 239.99937 * 2 1 3 26 26 H 1.09005 * 109.47269 * 184.99572 * 5 3 2 27 27 H 1.09003 * 109.47294 * 305.00006 * 5 3 2 28 28 H 0.97001 * 119.99584 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.54369 * 296.75182 * 16 14 3 30 30 H 1.09001 * 109.54863 * 57.01907 * 16 14 3 31 31 H 1.09001 * 109.52188 * 62.92015 * 17 16 14 32 32 H 1.09000 * 109.52737 * 183.11263 * 17 16 14 33 33 H 1.08997 * 109.48088 * 177.58875 * 18 17 16 34 34 H 1.09004 * 109.47856 * 297.62765 * 18 17 16 35 35 H 1.08995 * 109.47959 * 301.17523 * 20 19 18 36 36 H 1.09001 * 109.47991 * 181.13856 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 -0.0416 5 6 1.5783 2.1467 1.2773 6 6 2.2254 1.4951 2.4723 7 1 2.8991 0.6622 2.3343 8 6 1.9583 1.9628 3.7415 9 7 1.1384 2.9773 3.9094 10 14 2.7599 1.1546 5.2225 11 1 3.6329 0.0427 4.7677 12 1 3.5765 2.1577 5.9523 13 1 1.7081 0.6213 6.1251 14 6 1.4829 2.1804 -1.2190 15 1 0.3992 2.2592 -1.1332 16 6 2.0940 3.5831 -1.2917 17 6 1.5892 4.2831 -2.5572 18 6 1.9440 3.4308 -3.7785 19 8 1.3709 2.1298 -3.6326 20 6 1.8419 1.4093 -2.4920 21 1 -0.3633 0.4624 0.9177 22 1 -0.3633 0.5636 -0.8593 23 1 -0.3633 -1.0259 -0.0585 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8651 3.1976 1.2369 27 1 0.4945 2.0689 1.3637 28 1 0.9502 3.3061 4.8024 29 1 1.7958 4.1567 -0.4141 30 1 3.1808 3.5061 -1.3265 31 1 0.5075 4.4043 -2.4995 32 1 2.0620 5.2612 -2.6459 33 1 1.5496 3.9029 -4.6783 34 1 3.0276 3.3437 -3.8585 35 1 2.9241 1.2958 -2.5552 36 1 1.3739 0.4252 -2.4650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260575242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:39 Heat of formation + Delta-G solvation = -100.528608 kcal Electronic energy + Delta-G solvation = -14969.975430 eV Core-core repulsion = 12645.010505 eV Total energy + Delta-G solvation = -2324.964924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.64719 -37.78271 -34.71352 -33.99846 -31.36717 -30.47750 -26.87241 -26.04847 -24.34561 -23.86221 -21.37458 -19.79529 -18.44267 -17.14099 -16.98793 -16.46159 -15.92158 -15.48985 -15.23062 -14.90054 -14.48354 -13.96158 -13.61451 -13.45140 -13.15568 -13.03962 -12.71811 -12.54253 -12.43042 -12.10861 -11.99043 -11.62521 -11.52638 -11.41239 -11.10126 -10.86681 -10.71404 -10.48557 -10.14950 -8.15413 -6.23215 1.38255 1.39310 1.51398 2.42200 3.02935 3.18123 3.87373 3.91663 3.99389 4.08851 4.30800 4.38104 4.44592 4.49983 4.61346 4.66763 4.78837 4.84361 4.91492 4.99042 5.08526 5.10649 5.17649 5.23544 5.30020 5.36018 5.47076 5.54627 5.60059 5.71383 5.88099 5.97466 6.31093 6.35404 6.93956 7.44292 8.96348 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.043539 B = 0.007992 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.951786 B = 3502.828990 C = 3838.278752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.068 4.068 4 H 0.051 0.949 5 C 0.035 3.965 6 C -0.524 4.524 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.935 5.935 10 Si 0.955 3.045 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.281 1.281 14 C -0.109 4.109 15 H 0.061 0.939 16 C -0.120 4.120 17 C -0.150 4.150 18 C 0.058 3.942 19 O -0.401 6.401 20 C 0.071 3.929 21 H 0.031 0.969 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.074 0.926 26 H -0.011 1.011 27 H -0.005 1.005 28 H 0.260 0.740 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -1.650 -13.137 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.087 4.087 4 H 0.070 0.930 5 C -0.002 4.002 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.576 5.576 10 Si 0.781 3.219 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.128 4.128 15 H 0.079 0.921 16 C -0.157 4.157 17 C -0.188 4.188 18 C -0.018 4.018 19 O -0.320 6.320 20 C -0.006 4.006 21 H 0.050 0.950 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.007 0.993 27 H 0.013 0.987 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.743 -1.628 -13.145 13.359 hybrid contribution 0.336 0.169 1.643 1.685 sum 2.080 -1.459 -11.502 11.779 Atomic orbital electron populations 1.21762 0.96322 1.01193 1.00920 1.21449 0.96041 0.95963 1.01057 1.21048 0.98491 0.95260 0.93862 0.93032 1.19057 0.94969 0.94153 0.92037 1.21709 1.26443 1.15751 0.92346 0.92368 1.25890 0.96026 0.95741 1.02217 1.70110 1.37539 1.27186 1.22751 0.85543 0.78414 0.78655 0.79324 1.18624 1.20720 1.20706 1.21754 1.00199 0.95574 0.95278 0.92061 1.21648 1.00199 0.95996 0.97894 1.22183 1.01715 0.99949 0.94955 1.22733 0.98195 0.82758 0.98117 1.87868 1.68714 1.29411 1.46054 1.22720 0.98980 0.95201 0.83650 0.95006 0.92356 0.91983 0.93305 0.90795 0.99252 0.98675 0.93140 0.93553 0.91956 0.92022 0.89436 0.87084 0.92369 0.92614 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.15 71.99 0.66 -4.39 16 2 C -0.11 -3.86 5.01 30.60 0.15 -3.71 16 3 C -0.07 -2.71 1.70 -10.79 -0.02 -2.73 16 4 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 5 C 0.03 1.80 4.14 29.85 0.12 1.92 16 6 C -0.52 -29.46 8.37 25.60 0.21 -29.25 16 7 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 10 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 C -0.11 -3.72 1.40 -10.70 -0.02 -3.74 16 15 H 0.06 2.27 6.61 -2.39 -0.02 2.25 16 16 C -0.12 -3.93 4.99 30.71 0.15 -3.78 16 17 C -0.15 -3.87 6.14 30.69 0.19 -3.68 16 18 C 0.06 1.33 6.84 72.02 0.49 1.83 16 19 O -0.40 -11.37 10.77 -148.98 -1.60 -12.97 16 20 C 0.07 2.01 5.53 72.01 0.40 2.40 16 21 H 0.03 1.32 6.55 -2.39 -0.02 1.30 16 22 H 0.06 1.88 6.18 -2.39 -0.01 1.87 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.94 6.89 -2.39 -0.02 1.93 16 25 H 0.07 2.15 6.55 -2.39 -0.02 2.13 16 26 H -0.01 -0.61 6.43 -2.38 -0.02 -0.63 16 27 H -0.01 -0.29 6.32 -2.39 -0.02 -0.30 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.05 1.78 6.63 -2.39 -0.02 1.77 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 2.70 6.38 -2.39 -0.02 2.69 16 Total: -1.00 -63.61 272.69 4.55 -59.05 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.03 Total: 8.95 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 2.81 Total: -44.76 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.60 Total: -12.97 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.61 4.55 -59.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.475 kcal (2) G-P(sol) polarization free energy of solvation -63.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds