Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 H 1.08996 * 109.47618 * 183.04697 * 3 2 1 5 5 C 1.53001 * 109.47012 * 63.04177 * 3 2 1 6 6 C 1.50700 * 109.46754 * 65.00443 * 5 3 2 7 7 H 1.07994 * 120.00227 * 359.97438 * 6 5 3 8 8 C 1.37881 * 119.99874 * 180.02562 * 6 5 3 9 9 N 1.31513 * 119.99677 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47074 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46921 * 119.99935 * 10 8 6 13 13 H 1.48508 * 109.46943 * 239.99773 * 10 8 6 14 14 C 1.53003 * 109.47107 * 303.04319 * 3 2 1 15 15 H 1.09001 * 109.48104 * 55.81968 * 14 3 2 16 16 C 1.53089 * 109.48274 * 295.79428 * 14 3 2 17 17 C 1.53175 * 109.16439 * 182.40908 * 16 14 3 18 18 C 1.53178 * 109.03782 * 56.97878 * 17 16 14 19 19 C 1.53089 * 109.16287 * 303.02065 * 18 17 16 20 20 O 1.42901 * 109.48212 * 175.84913 * 14 3 2 21 21 H 1.08994 * 109.46719 * 303.27600 * 1 2 3 22 22 H 1.09005 * 109.46867 * 63.27560 * 1 2 3 23 23 H 1.09001 * 109.46895 * 183.27191 * 1 2 3 24 24 H 1.09008 * 109.46625 * 239.99932 * 2 1 3 25 25 H 1.08995 * 109.47086 * 120.00647 * 2 1 3 26 26 H 1.08993 * 109.47074 * 305.00036 * 5 3 2 27 27 H 1.08999 * 109.47058 * 184.99989 * 5 3 2 28 28 H 0.97000 * 120.00158 * 179.97438 * 9 8 6 29 29 H 1.08999 * 109.52402 * 302.31184 * 16 14 3 30 30 H 1.09004 * 109.52568 * 62.50165 * 16 14 3 31 31 H 1.08999 * 109.54520 * 176.84511 * 17 16 14 32 32 H 1.09002 * 109.54173 * 297.02003 * 17 16 14 33 33 H 1.08998 * 109.52169 * 62.92884 * 18 17 16 34 34 H 1.09004 * 109.52314 * 183.11605 * 18 17 16 35 35 H 1.08997 * 109.47969 * 177.59227 * 19 18 17 36 36 H 1.09004 * 109.48302 * 297.61389 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1287 1.4430 -0.0546 5 6 1.5935 2.1412 1.2858 6 6 2.2549 1.4846 2.4700 7 1 2.9262 0.6519 2.3206 8 6 2.0022 1.9462 3.7444 9 7 1.1843 2.9599 3.9264 10 14 2.8214 1.1318 5.2124 11 1 3.6888 0.0219 4.7424 12 1 3.6456 2.1321 5.9372 13 1 1.7804 0.5937 6.1246 14 6 1.4685 2.1855 -1.2092 15 1 0.3805 2.1214 -1.1943 16 6 1.9997 1.5502 -2.4968 17 6 1.4715 2.3363 -3.7005 18 6 1.8887 3.8036 -3.5612 19 6 1.3618 4.3519 -2.2325 20 8 1.8660 3.5571 -1.1573 21 1 -0.3632 0.5638 0.8591 22 1 -0.3633 0.4622 -0.9179 23 1 -0.3633 -1.0260 0.0587 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.5109 2.0631 1.3846 27 1 1.8798 3.1922 1.2463 28 1 1.0062 3.2845 4.8229 29 1 3.0894 1.5774 -2.4938 30 1 1.6605 0.5162 -2.5597 31 1 1.8908 1.9236 -4.6181 32 1 0.3842 2.2666 -3.7329 33 1 2.9761 3.8764 -3.5797 34 1 1.4700 4.3812 -4.3853 35 1 1.6920 5.3832 -2.1083 36 1 0.2723 4.3165 -2.2311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = -81.160544 kcal Electronic energy + Delta-G solvation = -14983.029567 eV Core-core repulsion = 12658.904505 eV Total energy + Delta-G solvation = -2324.125062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21787 -35.72093 -33.31522 -32.40595 -30.16039 -28.54785 -25.63160 -23.93853 -23.11874 -22.19269 -19.94671 -18.38022 -16.30450 -15.89375 -15.49266 -14.60213 -14.26320 -14.07498 -13.81218 -13.17736 -13.08850 -12.48301 -12.28588 -11.68334 -11.60663 -11.24383 -11.07760 -10.93185 -10.86300 -10.68369 -10.47046 -10.25273 -10.01886 -9.80990 -9.49723 -9.15035 -8.77529 -8.67465 -8.21270 -5.88093 -3.88486 3.36847 3.44321 3.48068 4.31144 4.54532 4.99275 5.01627 5.09419 5.32340 5.47353 5.52308 5.68921 5.73961 5.85832 5.86531 5.92306 6.02489 6.03972 6.11347 6.15983 6.21553 6.38567 6.51242 6.54120 6.68552 6.89844 7.00153 7.08789 7.32061 7.83779 7.88572 8.06438 8.18345 8.56825 9.18970 9.73600 11.23229 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.042373 B = 0.008184 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.647132 B = 3420.425008 C = 3761.543902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.075 4.075 4 H 0.061 0.939 5 C 0.029 3.971 6 C -0.511 4.511 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.094 3.906 15 H 0.055 0.945 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.155 4.155 19 C 0.059 3.941 20 O -0.366 6.366 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.018 0.982 27 H 0.026 0.974 28 H 0.257 0.743 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 -1.547 -13.464 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.093 4.093 4 H 0.079 0.921 5 C -0.007 4.007 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.037 3.963 15 H 0.072 0.928 16 C -0.189 4.189 17 C -0.159 4.159 18 C -0.193 4.193 19 C -0.019 4.019 20 O -0.284 6.284 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.690 -1.373 -13.179 13.268 hybrid contribution 0.248 -0.443 0.591 0.779 sum -0.442 -1.816 -12.588 12.726 Atomic orbital electron populations 1.21869 0.96863 1.00399 1.01845 1.21430 0.95544 0.96566 1.00799 1.21234 0.99432 0.93683 0.94982 0.92087 1.19121 0.96392 0.96076 0.89158 1.21316 1.26530 1.15707 0.91373 0.92774 1.24999 0.95467 0.95164 0.98879 1.69987 1.36291 1.25737 1.21497 0.86633 0.79338 0.79419 0.83181 1.19853 1.21169 1.21205 1.22338 0.97883 0.81432 0.94693 0.92763 1.22284 1.01573 0.99751 0.95315 1.21590 1.00631 0.95367 0.98327 1.22192 1.01921 0.96689 0.98478 1.22475 0.97504 0.95276 0.86602 1.88071 1.74293 1.20245 1.45808 0.91057 0.93960 0.94129 0.94164 0.90710 0.96398 0.95575 0.93298 0.91455 0.91022 0.92197 0.92219 0.91324 0.91652 0.89505 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.18 37.16 0.34 -2.35 16 2 C -0.11 -1.98 5.23 -26.73 -0.14 -2.12 16 3 C -0.07 -1.58 1.89 -90.62 -0.17 -1.75 16 4 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 5 C 0.03 0.77 4.18 -27.88 -0.12 0.66 16 6 C -0.51 -14.55 8.37 -34.44 -0.29 -14.84 16 7 H 0.05 1.50 7.07 -52.49 -0.37 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.09 1.72 1.92 -26.68 -0.05 1.67 16 15 H 0.05 1.00 6.21 -51.93 -0.32 0.68 16 16 C -0.15 -2.25 5.09 -26.59 -0.14 -2.38 16 17 C -0.12 -1.52 6.03 -26.55 -0.16 -1.68 16 18 C -0.16 -1.93 6.14 -26.59 -0.16 -2.09 16 19 C 0.06 0.88 6.84 37.20 0.25 1.13 16 20 O -0.37 -7.21 9.47 -35.23 -0.33 -7.55 16 21 H 0.07 1.45 6.25 -51.93 -0.32 1.13 16 22 H 0.04 0.67 6.47 -51.93 -0.34 0.33 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.65 6.75 -51.92 -0.35 0.30 16 25 H 0.07 1.53 6.87 -51.93 -0.36 1.17 16 26 H 0.02 0.49 6.21 -51.93 -0.32 0.17 16 27 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -30.70 275.51 -7.25 -37.95 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.06 Total: -2.63 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -0.73 Total: -22.24 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.33 Total: -7.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.70 -7.25 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.213 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds