Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 H 1.08996 * 109.47618 * 183.04697 * 3 2 1 5 5 C 1.53001 * 109.47012 * 63.04177 * 3 2 1 6 6 C 1.50700 * 109.46754 * 65.00443 * 5 3 2 7 7 H 1.07994 * 120.00227 * 359.97438 * 6 5 3 8 8 C 1.37881 * 119.99874 * 180.02562 * 6 5 3 9 9 N 1.31513 * 119.99677 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47074 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46921 * 119.99935 * 10 8 6 13 13 H 1.48508 * 109.46943 * 239.99773 * 10 8 6 14 14 C 1.53003 * 109.47107 * 303.04319 * 3 2 1 15 15 H 1.09001 * 109.48104 * 55.81968 * 14 3 2 16 16 C 1.53089 * 109.48274 * 295.79428 * 14 3 2 17 17 C 1.53175 * 109.16439 * 182.40908 * 16 14 3 18 18 C 1.53178 * 109.03782 * 56.97878 * 17 16 14 19 19 C 1.53089 * 109.16287 * 303.02065 * 18 17 16 20 20 O 1.42901 * 109.48212 * 175.84913 * 14 3 2 21 21 H 1.08994 * 109.46719 * 303.27600 * 1 2 3 22 22 H 1.09005 * 109.46867 * 63.27560 * 1 2 3 23 23 H 1.09001 * 109.46895 * 183.27191 * 1 2 3 24 24 H 1.09008 * 109.46625 * 239.99932 * 2 1 3 25 25 H 1.08995 * 109.47086 * 120.00647 * 2 1 3 26 26 H 1.08993 * 109.47074 * 305.00036 * 5 3 2 27 27 H 1.08999 * 109.47058 * 184.99989 * 5 3 2 28 28 H 0.97000 * 120.00158 * 179.97438 * 9 8 6 29 29 H 1.08999 * 109.52402 * 302.31184 * 16 14 3 30 30 H 1.09004 * 109.52568 * 62.50165 * 16 14 3 31 31 H 1.08999 * 109.54520 * 176.84511 * 17 16 14 32 32 H 1.09002 * 109.54173 * 297.02003 * 17 16 14 33 33 H 1.08998 * 109.52169 * 62.92884 * 18 17 16 34 34 H 1.09004 * 109.52314 * 183.11605 * 18 17 16 35 35 H 1.08997 * 109.47969 * 177.59227 * 19 18 17 36 36 H 1.09004 * 109.48302 * 297.61389 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1287 1.4430 -0.0546 5 6 1.5935 2.1412 1.2858 6 6 2.2549 1.4846 2.4700 7 1 2.9262 0.6519 2.3206 8 6 2.0022 1.9462 3.7444 9 7 1.1843 2.9599 3.9264 10 14 2.8214 1.1318 5.2124 11 1 3.6888 0.0219 4.7424 12 1 3.6456 2.1321 5.9372 13 1 1.7804 0.5937 6.1246 14 6 1.4685 2.1855 -1.2092 15 1 0.3805 2.1214 -1.1943 16 6 1.9997 1.5502 -2.4968 17 6 1.4715 2.3363 -3.7005 18 6 1.8887 3.8036 -3.5612 19 6 1.3618 4.3519 -2.2325 20 8 1.8660 3.5571 -1.1573 21 1 -0.3632 0.5638 0.8591 22 1 -0.3633 0.4622 -0.9179 23 1 -0.3633 -1.0260 0.0587 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.5109 2.0631 1.3846 27 1 1.8798 3.1922 1.2463 28 1 1.0062 3.2845 4.8229 29 1 3.0894 1.5774 -2.4938 30 1 1.6605 0.5162 -2.5597 31 1 1.8908 1.9236 -4.6181 32 1 0.3842 2.2666 -3.7329 33 1 2.9761 3.8764 -3.5797 34 1 1.4700 4.3812 -4.3853 35 1 1.6920 5.3832 -2.1083 36 1 0.2723 4.3165 -2.2311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = -99.541374 kcal Electronic energy + Delta-G solvation = -14983.826619 eV Core-core repulsion = 12658.904505 eV Total energy + Delta-G solvation = -2324.922115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57515 -37.34034 -34.68745 -34.36647 -31.44203 -30.44802 -27.32252 -25.36386 -24.61029 -23.87444 -21.11374 -20.02669 -18.40596 -17.34919 -16.84972 -16.54414 -15.67864 -15.31851 -15.24148 -14.64530 -14.43775 -14.29312 -13.56644 -13.33172 -13.26294 -13.04078 -12.61858 -12.51333 -12.41088 -12.16871 -11.96865 -11.61862 -11.52314 -11.44921 -11.26821 -10.89887 -10.62005 -10.47706 -10.12149 -8.13350 -6.22188 1.39228 1.39878 1.52757 2.43522 3.00690 3.19465 3.86012 3.97215 4.02020 4.11896 4.26811 4.33787 4.37638 4.50651 4.55251 4.70837 4.75070 4.88972 4.94945 5.04020 5.06787 5.10189 5.16258 5.21970 5.27955 5.31809 5.45474 5.52283 5.54416 5.71374 5.89260 5.98296 6.34367 6.54985 6.95541 7.44932 8.98809 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.042373 B = 0.008184 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.647132 B = 3420.425008 C = 3761.543902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.071 4.071 4 H 0.047 0.953 5 C 0.040 3.960 6 C -0.526 4.526 7 H 0.059 0.941 8 C -0.004 4.004 9 N -0.935 5.935 10 Si 0.959 3.041 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.278 1.278 14 C 0.096 3.904 15 H 0.051 0.949 16 C -0.145 4.145 17 C -0.119 4.119 18 C -0.149 4.149 19 C 0.047 3.953 20 O -0.408 6.408 21 H 0.032 0.968 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.053 0.947 26 H -0.004 1.004 27 H -0.018 1.018 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -2.982 -15.119 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.090 4.090 4 H 0.065 0.935 5 C 0.003 3.997 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.201 4.201 9 N -0.577 5.577 10 Si 0.784 3.216 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.204 1.204 14 C 0.039 3.961 15 H 0.068 0.932 16 C -0.183 4.183 17 C -0.156 4.156 18 C -0.186 4.186 19 C -0.029 4.029 20 O -0.328 6.328 21 H 0.051 0.949 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.001 0.999 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.379 -2.815 -14.852 15.121 hybrid contribution 0.132 0.079 1.101 1.112 sum -0.247 -2.736 -13.751 14.023 Atomic orbital electron populations 1.21799 0.95969 1.01533 1.01108 1.21378 0.96281 0.94650 1.01530 1.21113 0.98657 0.95384 0.93817 0.93479 1.18916 0.94805 0.94050 0.91911 1.21713 1.26510 1.15813 0.92403 0.92293 1.25951 0.96092 0.95758 1.02277 1.70134 1.37829 1.27340 1.22358 0.85481 0.78435 0.78598 0.79038 1.18513 1.20758 1.20394 1.22242 0.97468 0.81213 0.95197 0.93163 1.22215 1.01194 1.00648 0.94217 1.21613 1.01230 0.94783 0.98017 1.22153 1.01734 0.97234 0.97516 1.22758 0.97883 0.95263 0.86989 1.88010 1.75076 1.21264 1.48403 0.94873 0.92008 0.91593 0.90432 0.92836 0.98605 0.99920 0.93124 0.91984 0.89404 0.89592 0.91396 0.91692 0.88736 0.88831 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.18 71.98 0.66 -4.37 16 2 C -0.10 -3.69 5.23 30.59 0.16 -3.53 16 3 C -0.07 -3.06 1.89 -10.79 -0.02 -3.08 16 4 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 5 C 0.04 2.23 4.18 29.85 0.12 2.35 16 6 C -0.53 -30.89 8.37 25.60 0.21 -30.68 16 7 H 0.06 3.32 7.07 -2.91 -0.02 3.30 16 8 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 9 N -0.94 -59.28 13.29 21.45 0.28 -58.99 16 10 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.10 3.50 1.92 30.62 0.06 3.56 16 15 H 0.05 1.84 6.21 -2.39 -0.01 1.83 16 16 C -0.15 -3.95 5.09 30.68 0.16 -3.80 16 17 C -0.12 -2.55 6.03 30.71 0.19 -2.37 16 18 C -0.15 -3.31 6.14 30.68 0.19 -3.12 16 19 C 0.05 1.39 6.84 72.01 0.49 1.88 16 20 O -0.41 -16.46 9.47 -148.98 -1.41 -17.87 16 21 H 0.03 1.37 6.25 -2.39 -0.01 1.35 16 22 H 0.06 1.85 6.47 -2.38 -0.02 1.83 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.08 2.27 6.75 -2.38 -0.02 2.25 16 25 H 0.05 2.16 6.87 -2.39 -0.02 2.15 16 26 H 0.00 -0.25 6.21 -2.39 -0.01 -0.27 16 27 H -0.02 -1.12 7.42 -2.39 -0.02 -1.13 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 2.09 6.74 -2.38 -0.02 2.08 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -68.92 275.51 4.61 -64.31 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.03 Total: 7.60 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 2.68 Total: -42.93 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.28 Total: -58.99 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -1.41 Total: -17.87 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.92 4.61 -64.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.228 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds