Wall clock time and date at job start Mon Mar 30 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46808 * 2 1 4 4 H 1.09003 * 109.47394 * 174.79944 * 3 2 1 5 5 C 1.53008 * 109.47289 * 294.79743 * 3 2 1 6 6 C 1.50699 * 109.46624 * 294.81908 * 5 3 2 7 7 H 1.08006 * 120.00722 * 356.36793 * 6 5 3 8 8 C 1.37877 * 119.99983 * 176.37085 * 6 5 3 9 9 N 1.31518 * 119.99853 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00387 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47044 * 60.00050 * 10 8 6 12 12 H 1.48505 * 109.47283 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47222 * 299.99978 * 10 8 6 14 14 C 1.52998 * 109.47252 * 54.79746 * 3 2 1 15 15 H 1.09005 * 109.48018 * 299.97345 * 14 3 2 16 16 C 1.53089 * 109.48097 * 59.99963 * 14 3 2 17 17 C 1.53184 * 109.16341 * 177.59045 * 16 14 3 18 18 C 1.53177 * 109.03635 * 303.01933 * 17 16 14 19 19 C 1.53097 * 109.16340 * 56.97810 * 18 17 16 20 20 O 1.42904 * 109.41647 * 302.39423 * 19 18 17 21 21 H 1.08998 * 109.47396 * 296.73225 * 1 2 3 22 22 H 1.09002 * 109.46694 * 176.73499 * 1 2 3 23 23 H 1.09002 * 109.47077 * 56.74183 * 1 2 3 24 24 H 1.09001 * 109.47219 * 119.99712 * 2 1 3 25 25 H 1.08998 * 109.47307 * 239.99895 * 2 1 3 26 26 H 1.08995 * 109.47030 * 54.81445 * 5 3 2 27 27 H 1.08996 * 109.47311 * 174.82302 * 5 3 2 28 28 H 0.97001 * 120.00349 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.52104 * 297.49961 * 16 14 3 30 30 H 1.09003 * 109.52321 * 57.62672 * 16 14 3 31 31 H 1.08998 * 109.53875 * 62.88786 * 17 16 14 32 32 H 1.08999 * 109.54273 * 183.15281 * 17 16 14 33 33 H 1.08995 * 109.52119 * 176.88478 * 18 17 16 34 34 H 1.09004 * 109.52603 * 297.07637 * 18 17 16 35 35 H 1.09001 * 109.47932 * 62.37314 * 19 18 17 36 36 H 1.09003 * 109.48174 * 182.39475 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4440 0.0932 5 6 1.6395 2.1250 -1.3096 6 6 2.3458 1.4565 -2.4607 7 1 3.0580 0.6667 -2.2722 8 6 2.0830 1.8532 -3.7548 9 7 1.2162 2.8153 -3.9844 10 14 2.9590 1.0251 -5.1818 11 1 2.6445 -0.4262 -5.1806 12 1 2.5033 1.6288 -6.4598 13 1 4.4250 1.2141 -5.0395 14 6 1.4259 2.2005 1.1787 15 1 0.3399 2.1995 1.0854 16 6 1.8265 1.5178 2.4891 17 6 1.2583 2.3165 3.6663 18 6 1.7670 3.7590 3.5832 19 6 1.3688 4.3551 2.2304 20 8 1.9031 3.5475 1.1796 21 1 -0.3634 0.4622 0.9178 22 1 -0.3633 -1.0260 -0.0585 23 1 -0.3633 0.5636 -0.8594 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 0.5615 2.0424 -1.4474 27 1 1.9215 3.1772 -1.2719 28 1 1.0310 3.0942 -4.8948 29 1 1.4256 0.5044 2.5091 30 1 2.9133 1.4812 2.5633 31 1 0.1694 2.3105 3.6192 32 1 1.5866 1.8676 4.6037 33 1 1.3235 4.3484 4.3857 34 1 2.8527 3.7686 3.6800 35 1 0.2820 4.3825 2.1510 36 1 1.7648 5.3674 2.1485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:35 Heat of formation + Delta-G solvation = -81.590261 kcal Electronic energy + Delta-G solvation = -14983.540910 eV Core-core repulsion = 12659.397214 eV Total energy + Delta-G solvation = -2324.143696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23181 -35.72699 -33.32542 -32.41590 -30.10596 -28.60229 -25.61654 -23.94243 -23.12060 -22.19733 -19.93752 -18.38616 -16.31758 -15.88985 -15.50446 -14.59550 -14.27354 -14.07716 -13.82458 -13.20277 -13.04889 -12.49079 -12.28140 -11.67546 -11.57725 -11.25251 -11.08099 -10.93436 -10.87286 -10.67001 -10.51292 -10.24703 -10.00682 -9.83206 -9.49639 -9.16702 -8.81255 -8.67657 -8.21381 -5.88309 -3.88806 3.39059 3.43377 3.45807 4.30344 4.54275 4.98942 5.01630 5.09271 5.32247 5.46965 5.52535 5.68682 5.74341 5.85457 5.86213 5.92830 6.02169 6.03894 6.11332 6.15535 6.21192 6.38201 6.50753 6.54202 6.68383 6.88860 7.00885 7.09841 7.32084 7.82580 7.87228 8.05316 8.16902 8.56258 9.17848 9.73112 11.22974 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.043122 B = 0.008126 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.162866 B = 3444.951800 C = 3775.721410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.075 4.075 4 H 0.061 0.939 5 C 0.030 3.970 6 C -0.512 4.512 7 H 0.053 0.947 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.095 3.905 15 H 0.054 0.946 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.155 4.155 19 C 0.059 3.941 20 O -0.367 6.367 21 H 0.042 0.958 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -1.311 13.465 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.093 4.093 4 H 0.079 0.921 5 C -0.007 4.007 6 C -0.551 4.551 7 H 0.071 0.929 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.037 3.963 15 H 0.072 0.928 16 C -0.190 4.190 17 C -0.159 4.159 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.286 6.286 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.080 -1.144 13.178 13.272 hybrid contribution 0.264 -0.463 -0.578 0.786 sum -0.817 -1.607 12.601 12.729 Atomic orbital electron populations 1.21866 0.96901 1.00425 1.01775 1.21436 0.95480 0.96547 1.00885 1.21231 0.99226 0.93605 0.95248 0.92082 1.19121 0.96706 0.95906 0.88986 1.21233 1.23656 1.18948 0.91214 0.92884 1.24992 0.95405 0.95239 0.98809 1.69965 1.34394 1.28901 1.20314 0.86744 0.80113 0.79654 0.81971 1.20396 1.21431 1.20374 1.22335 0.97657 0.81795 0.94474 0.92766 1.22292 1.01608 0.99663 0.95389 1.21594 1.00339 0.95481 0.98514 1.22193 1.01874 0.96808 0.98407 1.22476 0.97747 0.94848 0.86770 1.88056 1.69113 1.22038 1.49374 0.93930 0.94107 0.91191 0.94126 0.90603 0.96168 0.95940 0.93167 0.90922 0.91481 0.92203 0.92181 0.91646 0.91340 0.93807 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.14 37.16 0.34 -2.34 16 2 C -0.11 -1.99 5.10 -26.73 -0.14 -2.13 16 3 C -0.07 -1.58 1.91 -90.62 -0.17 -1.75 16 4 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 5 C 0.03 0.78 4.25 -27.88 -0.12 0.66 16 6 C -0.51 -14.60 8.26 -34.44 -0.28 -14.88 16 7 H 0.05 1.47 7.23 -52.48 -0.38 1.09 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.09 1.74 1.73 -26.69 -0.05 1.69 16 15 H 0.05 1.01 6.42 -51.93 -0.33 0.68 16 16 C -0.15 -2.25 4.99 -26.59 -0.13 -2.38 16 17 C -0.12 -1.52 6.03 -26.54 -0.16 -1.68 16 18 C -0.16 -1.92 6.14 -26.59 -0.16 -2.08 16 19 C 0.06 0.88 6.84 37.21 0.25 1.13 16 20 O -0.37 -7.21 9.65 -35.23 -0.34 -7.55 16 21 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.42 6.32 -51.93 -0.33 1.09 16 24 H 0.04 0.65 6.78 -51.93 -0.35 0.30 16 25 H 0.08 1.56 6.91 -51.93 -0.36 1.20 16 26 H 0.02 0.56 6.28 -51.93 -0.33 0.23 16 27 H 0.02 0.65 7.53 -51.93 -0.39 0.26 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.07 1.01 6.67 -51.93 -0.35 0.66 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -30.61 275.89 -7.28 -37.89 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.09 Total: -2.61 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -0.72 Total: -22.22 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.34 Total: -7.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.61 -7.28 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.701 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds