Wall clock time and date at job start Mon Mar 30 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47384 * 2 1 4 4 C 1.52993 * 109.47174 * 120.00354 * 2 1 3 5 5 H 1.09002 * 109.90781 * 53.94670 * 4 2 1 6 6 N 1.47897 * 109.91779 * 292.84857 * 4 2 1 7 7 C 1.46896 * 111.00531 * 94.60391 * 6 4 2 8 8 C 1.48533 * 105.82296 * 215.11930 * 6 4 2 9 9 C 1.54939 * 103.22686 * 39.20237 * 8 6 4 10 10 C 1.53997 * 110.08534 * 175.16006 * 4 2 1 11 11 N 1.46901 * 110.30374 * 1.75149 * 10 4 2 12 12 C 1.50703 * 110.30724 * 239.58832 * 10 4 2 13 13 H 1.08000 * 120.00063 * 359.97438 * 12 10 4 14 14 C 1.37873 * 119.99612 * 179.97438 * 12 10 4 15 15 N 1.31514 * 120.00367 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99712 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46766 * 60.00167 * 16 14 12 18 18 H 1.48498 * 109.46920 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47469 * 299.99907 * 16 14 12 20 20 H 1.09006 * 109.47059 * 59.99559 * 1 2 3 21 21 H 1.08997 * 109.47525 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46900 * 300.00161 * 1 2 3 23 23 H 1.09010 * 109.46948 * 239.99996 * 2 1 3 24 24 H 1.08999 * 109.47211 * 186.68239 * 3 2 1 25 25 H 1.09003 * 109.47482 * 306.68420 * 3 2 1 26 26 H 1.09000 * 109.47038 * 66.68690 * 3 2 1 27 27 H 1.09004 * 109.46962 * 59.99883 * 7 6 4 28 28 H 1.08997 * 109.47764 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47003 * 300.00526 * 7 6 4 30 30 H 1.08999 * 110.66986 * 157.63690 * 8 6 4 31 31 H 1.08998 * 110.66906 * 280.77068 * 8 6 4 32 32 H 1.09010 * 110.71955 * 80.94503 * 9 8 6 33 33 H 1.08995 * 110.72319 * 204.22872 * 9 8 6 34 34 H 1.00902 * 110.99457 * 180.02562 * 11 10 4 35 35 H 1.00904 * 111.00299 * 303.95183 * 11 10 4 36 36 H 0.97000 * 119.99898 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5950 -1.7144 1.3120 6 7 1.6989 0.0609 2.4571 7 6 0.4381 -0.4066 3.0484 8 6 2.8319 -0.1324 3.3980 9 6 4.0724 -0.1019 2.4702 10 6 3.5750 -0.8361 1.2039 11 7 4.0996 -0.1834 -0.0031 12 6 3.9926 -2.2836 1.2405 13 1 3.2440 -3.0605 1.2918 14 6 5.3302 -2.6162 1.2086 15 7 6.2417 -1.6703 1.1457 16 14 5.8478 -4.4106 1.2547 17 1 5.2733 -5.1217 0.0845 18 1 7.3294 -4.4996 1.2089 19 1 5.3523 -5.0367 2.5067 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8901 24 1 3.1235 1.4447 -0.1196 25 1 1.5824 1.9897 -0.8241 26 1 1.7777 1.9205 0.9438 27 1 0.5346 -1.4559 3.3272 28 1 0.2107 0.1857 3.9347 29 1 -0.3669 -0.2963 2.3218 30 1 2.8734 0.6809 4.1225 31 1 2.7528 -1.0951 3.9029 32 1 4.3533 0.9248 2.2354 33 1 4.9065 -0.6371 2.9237 34 1 5.1054 -0.2529 -0.0435 35 1 3.6772 -0.5680 -0.8348 36 1 7.1828 -1.9044 1.1228 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260599124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:04 Heat of formation + Delta-G solvation = 11.593025 kcal Electronic energy + Delta-G solvation = -15729.488527 eV Core-core repulsion = 13441.678313 eV Total energy + Delta-G solvation = -2287.810214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93101 -34.04237 -33.68653 -31.20558 -28.75559 -26.80769 -26.30133 -25.11097 -23.34806 -21.12974 -19.51021 -17.90849 -16.44783 -15.08103 -14.94034 -14.30804 -14.18657 -13.60165 -13.00991 -12.64548 -12.43329 -12.21785 -11.98447 -11.72517 -11.16823 -11.08254 -10.77908 -10.63164 -10.56593 -10.38082 -10.15238 -10.03870 -9.88671 -9.60684 -9.34742 -9.00406 -8.50127 -7.57036 -6.94817 -6.02588 -4.23566 3.22014 3.27860 3.30628 4.31174 4.89564 5.12900 5.69330 5.74404 5.81024 5.86555 5.96795 6.12315 6.20602 6.28590 6.35230 6.38635 6.48432 6.55541 6.58757 6.78053 6.84536 7.04663 7.06984 7.27613 7.36956 7.47573 7.68257 7.69786 7.77652 7.86979 7.96906 8.22974 8.73950 9.01419 9.21008 9.50107 10.89167 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.011595 C = 0.011019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.984371 B = 2414.327125 C = 2540.374583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.062 4.062 3 C -0.151 4.151 4 C 0.083 3.917 5 H 0.036 0.964 6 N -0.510 5.510 7 C 0.010 3.990 8 C 0.037 3.963 9 C -0.088 4.088 10 C 0.239 3.761 11 N -0.832 5.832 12 C -0.542 4.542 13 H 0.050 0.950 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.278 1.278 20 H 0.040 0.960 21 H 0.038 0.962 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.352 0.648 35 H 0.312 0.688 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 2.418 0.456 6.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 C -0.208 4.208 4 C -0.026 4.026 5 H 0.054 0.946 6 N -0.234 5.234 7 C -0.140 4.140 8 C -0.091 4.091 9 C -0.127 4.127 10 C 0.147 3.853 11 N -0.363 5.363 12 C -0.582 4.582 13 H 0.068 0.932 14 C -0.133 4.133 15 N -0.525 5.525 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.204 1.204 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.127 0.873 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.169 0.831 35 H 0.122 0.878 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.661 3.666 0.636 7.630 hybrid contribution 0.584 -3.066 0.134 3.124 sum -6.077 0.600 0.770 6.155 Atomic orbital electron populations 1.22080 0.97997 0.99967 1.00838 1.20791 0.92574 0.97991 0.96812 1.22197 1.05831 0.93755 0.99017 1.22549 0.97850 0.92753 0.89451 0.94593 1.64622 1.01404 1.52219 1.05191 1.22669 0.94304 0.97520 0.99460 1.23166 0.92488 0.98176 0.95309 1.22329 0.95271 0.99278 0.95852 1.18973 0.87243 0.90651 0.88473 1.59742 1.13192 1.59432 1.03928 1.21881 0.91940 0.92784 1.51556 0.93191 1.24956 0.96581 0.97224 0.94504 1.69696 1.00957 1.31686 1.50125 0.86690 0.77371 0.85517 0.78600 1.20373 1.21205 1.20395 0.94045 0.94332 0.92297 0.92229 0.87291 0.96768 0.93069 0.96319 0.92637 0.91409 0.92221 0.94781 0.93072 0.90919 0.83111 0.87797 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.30 37.16 0.31 -2.17 16 2 C -0.06 -1.18 2.28 -90.63 -0.21 -1.39 16 3 C -0.15 -2.84 8.66 37.15 0.32 -2.52 16 4 C 0.08 1.74 1.95 -66.65 -0.13 1.61 16 5 H 0.04 0.82 6.98 -51.93 -0.36 0.46 16 6 N -0.51 -10.01 3.88 -230.79 -0.90 -10.91 16 7 C 0.01 0.16 9.05 60.06 0.54 0.70 16 8 C 0.04 0.75 6.56 -1.90 -0.01 0.74 16 9 C -0.09 -2.06 5.88 -24.87 -0.15 -2.20 16 10 C 0.24 5.60 0.65 -131.40 -0.09 5.51 16 11 N -0.83 -18.79 5.28 0.91 0.00 -18.78 16 12 C -0.54 -14.14 8.19 -34.44 -0.28 -14.42 16 13 H 0.05 1.34 7.34 -52.49 -0.39 0.96 16 14 C 0.07 1.82 5.00 -17.82 -0.09 1.73 16 15 N -0.89 -23.32 10.26 55.43 0.57 -22.75 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.95 5.67 -51.93 -0.29 0.66 16 23 H 0.06 1.16 6.57 -51.92 -0.34 0.82 16 24 H 0.11 2.24 5.30 -51.93 -0.28 1.96 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 1.00 7.21 -51.93 -0.37 0.63 16 27 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.06 5.14 -51.93 -0.27 0.79 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.72 7.96 -51.93 -0.41 0.30 16 32 H 0.05 1.20 8.06 -51.92 -0.42 0.79 16 33 H 0.07 1.86 6.77 -51.93 -0.35 1.51 16 34 H 0.35 8.64 6.83 -39.29 -0.27 8.37 16 35 H 0.31 6.81 7.04 -39.29 -0.28 6.54 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 264.70 15.07 3.99 3.99 Total: -1.00 -25.39 264.70 -6.82 -32.22 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.69 Total: 13.02 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 0.22 Total: -12.40 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.32 Total: -52.44 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.39 -6.82 -32.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.812 kcal (2) G-P(sol) polarization free energy of solvation -25.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds